Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b13
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...   211   1e-55
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    36   0.005
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    28   1.7  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   4.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   4.0  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   7.0  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   9.3  

>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  211 bits (515), Expect = 1e-55
 Identities = 112/211 (53%), Positives = 147/211 (69%), Gaps = 8/211 (3%)
 Frame = +1

Query: 172 PIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNS----FELLNCDDHGHILRKNDRDPG 339
           PIP   + SH     +RLIV+L+ A LE  K G +    ++LLNCDDH  IL+K +R+  
Sbjct: 134 PIPARSIGSH-DTTTQRLIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILKKLNRNIA 192

Query: 340 SCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLL 519
             RPDITHQ LL L+DSPLN+AG LQVYIHT K VLIE+NP  RIPRTFKRF+GLMVQLL
Sbjct: 193 QARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFKRFSGLMVQLL 252

Query: 520 HKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSFSSKIV--QNCRDLVPKDEPIVMV 693
           HK +IR+ +G  KLLKVIKNPVT +LP   +K T+SF +  V  +   + +  ++ + + 
Sbjct: 253 HKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDAPTVPPRKYLETLQPNQSVCIA 312

Query: 694 IGAMAHGKVEVD--YSEDVISISNYPLSAAL 780
           IGAMAHG  +    + ++ ISIS+YPLSA++
Sbjct: 313 IGAMAHGPDDFSDGWVDEKISISDYPLSASI 343


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 21/85 (24%), Positives = 43/85 (50%)
 Frame = +1

Query: 514 LLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSFSSKIVQNCRDLVPKDEPIVMV 693
           +L   A+  SDG +++L+V ++PV  H+ V     T  F+  ++  C  + P+   I  +
Sbjct: 288 ILGFLAVVCSDGKLRVLRVPRSPVKFHVFVEQADFTFGFNDSLISCCTWVSPEHGDIHQI 347

Query: 694 IGAMAHGKVEVDYSEDVISISNYPL 768
           +   ++G + +    D++S    PL
Sbjct: 348 LVGCSNGYLAL---WDILSSQECPL 369


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 272 FPFFTLSSCAFSRITIRRFSCFFMCEVTKCLGIGSNSKSSSLETNFLFLPI-LECTLQCY 96
           F  F+  +CA+  ++I   S  ++C  ++ LG  S       E + L L + +E +  C 
Sbjct: 135 FHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSVLLLNLTIEASKLCI 194

Query: 95  DLFKAIYYDR 66
            L++A + D+
Sbjct: 195 YLYEARHLDQ 204


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 100 HCKVHSKMGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVIL 237
           HCK+HSKM + + +V K +      IPK +    ++ Q+ + I  L
Sbjct: 37  HCKLHSKMLEPKAIVYKKNS---SAIPKRVDNILLRSQKPKHIECL 79


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 572 ITFKSFIGPSDALIANLCRS*TI 504
           I ++SFI   D L ANLCR+ T+
Sbjct: 121 IRYQSFIALQDKLHANLCRNRTL 143


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 206 FMCEVTKCLGIGSNSKSSSLETNFLFLPILECTLQCYDLFKAIYYD 69
           F+      L  GS+S  ++L  ++ FLP  +    C D+  A++YD
Sbjct: 150 FLAPQDAILSSGSSSSYTAL-LDYTFLPSEDEEYSCLDINTALFYD 194


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 540 CSNCKLV*KLNH*SSKTLECSRYSCLW 460
           CS CK   ++N  S + L C    CLW
Sbjct: 38  CSTCK---RINKRSIRCLSCHSVGCLW 61


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 574 KNPVTSHLPVGVKKITMSFSSKIVQNCRDLVPKDEPIVMV 693
           K PV + +  G K     FS K +Q+C  L P D   + V
Sbjct: 188 KEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPMDSKTLAV 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,386
Number of Sequences: 5004
Number of extensions: 69816
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)