Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b13
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.79 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.79 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.79 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 106 KVHSKMGKKRKLVSKDDDFEFDPIPKHLV 192
           K HSK G     ++   D E  P P+HL+
Sbjct: 359 KAHSKGGTLENTINGRADEEAAPAPQHLI 387


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 106 KVHSKMGKKRKLVSKDDDFEFDPIPKHLV 192
           K HSK G     ++   D E  P P+HL+
Sbjct: 359 KAHSKGGTLENTINGRADEEAAPAPQHLI 387


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 106 KVHSKMGKKRKLVSKDDDFEFDPIPKHLV 192
           K HSK G     ++   D E  P P+HL+
Sbjct: 297 KAHSKGGTLENTINGRADEEAAPAPQHLI 325


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 670 KDEPIVMVIGAMAHGK 717
           K  PIV ++G + HGK
Sbjct: 143 KRHPIVTIMGHVDHGK 158


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 233 SWKTHNWK 256
           +WKTH WK
Sbjct: 421 AWKTHVWK 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,937
Number of Sequences: 438
Number of extensions: 4512
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)