Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b11
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   4.0  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   4.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   5.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.9  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   6.9  

>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 71  ALGLQPQSKVKIIAHKTLEKFKRDAYTRFKGVKAIKNELKTYNLTLQQYNEALNQC 238
           AL LQ   +  ++  K L   ++ +    KG+  I   + TY  T+   NE +N C
Sbjct: 70  ALELQKLKQENVLLRKDLNNLEQISDCYAKGMDDIMKHVATYTATM---NERMNAC 122


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 366 YSLISLVLELKLTLYICLLFIFTPSLIS 283
           YSL+S VL +  T Y  ++F++  S ++
Sbjct: 477 YSLLSRVLVISSTAYFLIMFVYHSSWVT 504


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 53  KMIFMNALGLQPQSKVKIIAHKTLEKFKRDAYT 151
           K  +++ALG     K+ II+HK L  F  D ++
Sbjct: 303 KKKYIDALGSSFDEKIMIISHKYLAPFFTDQFS 335


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 23   MNTRGCVNNNKMIFMNALGLQPQSKVKIIAHKTLEKFKRDAYTR--FKGVKAIK 178
            M T+  ++++ M    ALG+   S  ++ AH   E  ++DA+    FK + ++K
Sbjct: 1269 MITKKSMSSDMMTQFRALGISQSSTKQVSAHYLREFERQDAFRNGVFKRLTSLK 1322


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 333 LTLYICLLFIFTPSLIS*CQLFVSRHRLS 247
           +T ++C   ++T +L+   +LF   HRLS
Sbjct: 156 ITAFVCTFVLYTGTLLFGDRLFDKPHRLS 184


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 137 RDAYTRFKGVKAIKNELKTYNLTLQQYNEALNQCALNDSRWRDT 268
           + A+ RF  V    NE++  NLT       L+   LN  +W  T
Sbjct: 210 KTAWGRFSLVVCEANEVEFLNLTPPPGKRVLHNRDLNTKQWSST 253


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 173 IKNELKTYNLTLQQYNEALNQCALNDSRWRD 265
           +  E K YN +L+ Y  AL     N+S W D
Sbjct: 85  VYRETKDYNNSLKCYQNALAISPNNESLWYD 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,149
Number of Sequences: 5004
Number of extensions: 26175
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)