Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b11
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347...    33   0.14 
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    29   2.3  
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039...    29   2.3  
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766...    29   3.0  
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497...    28   5.3  
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    27   9.2  

>08_02_1176 +
           24931728-24931877,24933175-24933275,24934410-24934788,
           24935509-24936354,24936555-24936642,24936947-24937039,
           24937221-24937318,24937364-24937470,24938266-24938353,
           24938748-24939005
          Length = 735

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 228 SASLYCCNVRLYVFSSFLIAFTPLKRVYASRLN-FSSVLCAIIFT 97
           S +LY  NV +YVFSS ++ F   K   +   N F +VL  +I T
Sbjct: 568 SRTLYVSNVGIYVFSSHMVHFGATKDALSRHFNKFGAVLKVVIVT 612


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 71  ALGLQPQSKVKIIAHKTLEKFKRDAYTRFKGVKA----IKNELKTYNLTLQQYNEALNQC 238
           A G  P   +  +  K L K   D YT+ KGV+      +NEL +    L+   E + + 
Sbjct: 60  ARGGPPAGVMNTLLSK-LSKILEDKYTKLKGVRRQIAFFRNELSSMKAALEML-ETVEEL 117

Query: 239 ALNDSRWRDT 268
                 WRDT
Sbjct: 118 DPLQKEWRDT 127


>07_02_0030 +
           12002825-12003510,12003654-12003708,12003911-12003996,
           12004093-12004433,12004512-12004699,12004776-12004962,
           12005035-12005139,12005202-12005239,12005369-12005653
          Length = 656

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 167 KAIKNELKTYNLTLQQYNEALNQCALNDSRWR--DTNNWHHDIKE 295
           KA+    +  N   Q+  E  N C ++ S W+   T N  H+IKE
Sbjct: 442 KALNQATRIVNNPSQERGEDRNSCKVSSSSWKLEATRNQLHEIKE 486


>12_02_0381 +
           18376045-18376114,18376270-18376420,18376524-18376681,
           18378680-18378945,18379025-18379243,18379309-18379417,
           18379488-18379603,18379935-18380033,18381447-18381556,
           18382928-18383006,18383127-18383273,18383363-18383443,
           18383529-18383648,18383902-18384024,18384276-18384353,
           18384459-18384547,18384653-18384761,18385018-18385086,
           18385200-18385310,18385657-18385712,18385808-18385985,
           18386065-18386166,18386243-18386314,18386489-18386554,
           18386674-18386739,18386853-18386936,18387080-18387196,
           18388077-18388163,18389321-18389341
          Length = 1050

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 74  LGLQPQSKVKIIAHKTLEKFKRDAYTRFKGVKAIKNELKTYNLT 205
           LGL   SK+++ +H    +  +    R++GV+ + + L  YN T
Sbjct: 804 LGLDDPSKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLVHYNQT 847


>01_05_0668 -
           24147412-24147618,24148019-24148286,24149506-24149728,
           24149822-24149996
          Length = 290

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 327 LYICLLFIFTP-SLIS*CQLFVSRHRLSFKAH*LSASLYCCNVRLYVFSSFLIAFTPLKR 151
           LY   LFIF P SL+S   + + R  ++  A  +SA+    N+R ++ +S    F  +  
Sbjct: 210 LYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMSATFVAMNLRAHIVNSGERWFLIVAG 269

Query: 150 VYASRLNFSSVLCAIIFTL 94
           ++  +L  + +L    FT+
Sbjct: 270 IFLLQLGLAVLLKLYFFTI 288


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 176 KNELKTYNLTLQQYNEALNQCALNDSRWRDTNNWHHDI---KEGVKINKRHI 322
           K E+ T ++   + +EA +Q A+  S  R + +W HD+   K+     K H+
Sbjct: 611 KGEVVTQSINEVERHEAGHQDAVQTSSVRKSRSWWHDVISSKKAADAVKAHV 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,497,977
Number of Sequences: 37544
Number of extensions: 137807
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)