Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b11
         (526 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119452-1|AAM50106.1|  456|Drosophila melanogaster AT28654p pro...    30   2.2  
AE013599-2389|AAO41367.1|  456|Drosophila melanogaster CG9002-PB...    30   2.2  
AE013599-2388|AAF57924.2|  456|Drosophila melanogaster CG9002-PA...    30   2.2  

>AY119452-1|AAM50106.1|  456|Drosophila melanogaster AT28654p
           protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -2

Query: 357 ISLVLELKLTLYICLLFIFTPSLIS*CQLFVSRHRLSFKAH*LSASLYCCNVRLYVFSSF 178
           I+L+    LT+YIC+ F+  P LI    L   R+ +S K       LYCC   + +  S 
Sbjct: 115 ITLIFVFYLTIYICIRFL--PVLIYDKCLLELRYGMSGK---FPWYLYCCIGAMSILLSQ 169

Query: 177 LIAFTPLKRVYASRLNF 127
           L+ F PL       + F
Sbjct: 170 LVLF-PLAAAIVFSVKF 185


>AE013599-2389|AAO41367.1|  456|Drosophila melanogaster CG9002-PB,
           isoform B protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -2

Query: 357 ISLVLELKLTLYICLLFIFTPSLIS*CQLFVSRHRLSFKAH*LSASLYCCNVRLYVFSSF 178
           I+L+    LT+YIC+ F+  P LI    L   R+ +S K       LYCC   + +  S 
Sbjct: 115 ITLIFVFYLTIYICIRFL--PVLIYDKCLLELRYGMSGK---FPWYLYCCIGAMSILLSQ 169

Query: 177 LIAFTPLKRVYASRLNF 127
           L+ F PL       + F
Sbjct: 170 LVLF-PLAAAIVFSVKF 185


>AE013599-2388|AAF57924.2|  456|Drosophila melanogaster CG9002-PA,
           isoform A protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -2

Query: 357 ISLVLELKLTLYICLLFIFTPSLIS*CQLFVSRHRLSFKAH*LSASLYCCNVRLYVFSSF 178
           I+L+    LT+YIC+ F+  P LI    L   R+ +S K       LYCC   + +  S 
Sbjct: 115 ITLIFVFYLTIYICIRFL--PVLIYDKCLLELRYGMSGK---FPWYLYCCIGAMSILLSQ 169

Query: 177 LIAFTPLKRVYASRLNF 127
           L+ F PL       + F
Sbjct: 170 LVLF-PLAAAIVFSVKF 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,824
Number of Sequences: 53049
Number of extensions: 257114
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1949978112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)