Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22b03
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 37 0.003
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 27 4.1
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 4.1
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 5.5
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 5.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.2
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 7.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.5
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 37.1 bits (82), Expect = 0.003
Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 41/245 (16%)
Frame = +2
Query: 155 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 319
AL AS A VP R + + + V +LE ++ K D +G L Y DA
Sbjct: 15 ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73
Query: 320 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNK--YDSRKSTSYVAN 490
Y+ +++G+ + + + DTGS WV +K + + + + D+ +STS +
Sbjct: 74 GGYFANLTLGSNERVYSLTLDTGSPYTWVTAKNITALSASEIWSDTDGVDAGRSTSDIRT 133
Query: 491 G--TQF-AIQYGS-------GSLSGFLST--DDVTVGGLKVRRQTFAEAVSEPGLAFVAA 634
T + Y S S GFL++ D+ TV G + + ++ PG F A
Sbjct: 134 NACTNYTCFDYSSTTARRTNSSTIGFLASYGDNTTVLGYNMVDNAYFAGLTLPGFEFGLA 193
Query: 635 --KFD--------GILG----MAFSTIAVDH----VTP--VFDNMVAQGLVQ-PVFSFYL 751
++D GI+G M + I+ D TP + D +V+ ++ P F YL
Sbjct: 194 TREYDSSQISVTPGIIGLSVAMTITGISSDDKVVAFTPPTIVDQLVSANVIDTPAFGIYL 253
Query: 752 NRDPG 766
N D G
Sbjct: 254 NEDVG 258
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -3
Query: 696 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERLPE 517
TG+TWST + +NL+A+K S SAN PP S+ K P
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSNDFWKDSNEPA 326
Query: 516 P 514
P
Sbjct: 327 P 327
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 714 ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSSV 544
+++ S T ++ S + P + S + T + GS D+A+++ W S +TSSV
Sbjct: 883 SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSV 941
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 618 SPGSDTASANVWRRTLSPPTVTSSVER---KPERLPEPYCIANWVPFATY 478
SP SDT S N+ LSP + S R +P R + ++N + A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 415 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 311
+FG + E GG G +R RR +D H +S++
Sbjct: 95 MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 128 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 226
MGK+S+ + A IAS+ + ++ P +R H
Sbjct: 1 MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 631 GHEGKPGLRHGLGERL 584
G EGKPG+ G+GE L
Sbjct: 72 GTEGKPGVSRGVGEEL 87
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -3
Query: 735 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 568
T TSP +T S+T V+W +T I + ++ S ++ T + S T +++ T S
Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661
Query: 567 PPTVTSS 547
T TSS
Sbjct: 662 SSTATSS 668
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 654 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 544
PR+ A++K + S TAS ++SP + SSV
Sbjct: 96 PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 90 ISKSPSCGF*KQQWERYLYF 149
+ K P CGF W +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -3
Query: 735 TGCTSP*ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTV 556
T TS +T L++ T ST++ A S++ T + + +SAN T + T
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 440
Query: 555 TSSV 544
SSV
Sbjct: 441 LSSV 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,772
Number of Sequences: 5004
Number of extensions: 62522
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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