Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22b02
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.056
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 28 1.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 2.1
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 2.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 2.8
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 3.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.7
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.9
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 4.9
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 6.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 8.5
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 8.5
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 8.5
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 8.5
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.056
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 443 TARLRTPSVQECRASPADFGFPTLEP*NVPKATLASFLAFNTETFTNTTIYLATF 607
T + T +++ AS G PT P N P T + T T+T T + +TF
Sbjct: 817 TTEIITSTIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTF 871
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -2
Query: 560 MLKNWPKLLLARFMVPKSENQNPQGLPCTLGPMVYVVLPLAGSN 429
+LK P LLA+ ++ K E++N P + P +Y+++ +A S+
Sbjct: 549 LLKMVPMELLAKILLEKLESKN----PILIEPSIYILVHIAASD 588
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 476 TLGPMVYVVLPLAGSNTTIFLSGSGY 399
T+ V VVLP AG+NT +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 476 TLGPMVYVVLPLAGSNTTIFLSGSGY 399
T+ V VVLP AG+NT +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 52 ATKRKIGDSSSDDNQPKRERVES 120
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 550 FFSIQYGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSE 693
FFS + +HK F +L+RHL D K ++C P K T++
Sbjct: 203 FFSYKVTTVHKSYQRFATLLRRHL-LDKTAKRYHDLCEKRPYKYITTD 249
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 431 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 342
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 461 VYVVLPLAGSNTTIFLSGSGYNLSS 387
V VV+P AG TT SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 461 VYVVLPLAGSNTTIFLSGSGYNLSS 387
V VV+P AG+ TT SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 684 FVLIRQMNAHVWFHFQRKIALQVSLQ-NVAKYIVVF 580
FVL+RQM + H QR L +++Q + YI +F
Sbjct: 318 FVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIF 353
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 483 QALRILVFRLWNHKTCQKQLWP 548
Q L IL+ +LWNHK + + P
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSP 240
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 56 LNARLAIRAATTTSQSGKEWK 118
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +1
Query: 169 FNVKHDETGVMCYFTP--SSVQLE----PRELTKMLWQ-EQMAINVKRGNFSILNCSCFE 327
F + H+ + +F+ S +Q E R L +L EQ++ V + FS N
Sbjct: 354 FLINHEHMRLRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIR 413
Query: 328 GRFLKNEFCRLANLNSLHEW 387
E+C+ ++NS EW
Sbjct: 414 SEI--GEYCKTLDINSCREW 431
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 398 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 297
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 182 CFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 27
C +L P+L + + +SP + +L+S + I R+ A L C C
Sbjct: 538 CPSLAVPPILTILASLQHTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDC 589
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 145 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 234
++NN+ N+KH E G + Y TP +LE
Sbjct: 61 FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 273 HLLLPQHLCQLAWLQLNGRRR 211
H+++PQ Q +W+ +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 503 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 336
N + G P +L + PLA S T+ L S S NL LF+ + +N+ +F
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262
Query: 335 NLPS 324
P+
Sbjct: 263 RRPT 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,293
Number of Sequences: 5004
Number of extensions: 73505
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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