Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b02
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   2.9  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   3.9  
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552...    29   5.1  
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026...    29   5.1  
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587...    29   5.1  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   5.1  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   6.7  
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009...    28   6.7  

>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 8   ELDLNHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 139
           E+  +H R  +S +   +ARL  R A  TS SG+ W+ V  + W
Sbjct: 170 EIAPHHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
 Frame = +1

Query: 328 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 489
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP 
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401

Query: 490 ---CGFWFSDFGTIK-RAKSNFGQFFSI 561
              C   F ++ + K R  ++ G++  I
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPI 429


>12_02_0878 +
           23952594-23952802,23954846-23955083,23955122-23955238,
           23955719-23955818,23956168-23956196,23956477-23956704
          Length = 306

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 595 FGNILQRHLQSDFPLKMEPNVCIHLPDK 678
           FG ++   L+++  LK+EP + + L DK
Sbjct: 260 FGQVVSEDLENEIKLKIEPELAVELYDK 287


>10_06_0167 +
           11401984-11402023,11402024-11402293,11402499-11402632,
           11402737-11403663
          Length = 456

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 586 NNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSERD 699
           NNI G  + RHL +   +    N C  +PD N  SE+D
Sbjct: 205 NNISG-AMPRHLSNFTSMSGSINGCGDIPDNNSPSEKD 241


>03_05_0429 -
           24157060-24157671,24158000-24158468,24158679-24158752,
           24159231-24159280,24159368-24159449,24159526-24159575,
           24159666-24159708,24159804-24159884,24159988-24160033,
           24160151-24160197,24160358-24160423,24160701-24160767,
           24160913-24160998
          Length = 590

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 541 FGQFFSIQYGDIHKHNNIFGNILQRHLQS 627
           F  FFS+Q  ++ KH ++   +LQ HL+S
Sbjct: 232 FASFFSLQAAELLKHPHLQPYVLQVHLKS 260


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 182 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 27
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 277 INVKRGNFSILNCSCFEGRFLKNEFC 354
           + + +      +CSC+ G ++KN FC
Sbjct: 72  MGICKNTIGSFDCSCYPGSYMKNGFC 97


>08_01_1068 +
           10899965-10900129,10900408-10900562,10900688-10900996,
           10901870-10901939,10902504-10902802,10904305-10904724,
           10906063-10906324
          Length = 559

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 676 YPANECTRLVPFSKENRFASVFAKCCQIYCCVCECLRIEC*KTGQSCFWHVLWFQSRKTK 497
           + AN  T++VP  ++ R +S F+  C++                 +CFW V W   RK +
Sbjct: 85  HAANALTKVVPILQK-RLSSSFSDRCRMAVSAGVIW-------SSACFWKVAW---RKLQ 133

Query: 496 IRRACPALLDRW 461
           +  + PA   RW
Sbjct: 134 LTTSPPATPSRW 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,141,126
Number of Sequences: 37544
Number of extensions: 472410
Number of successful extensions: 1508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)