Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22a19
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 226 2e-60
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.7
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.7
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 1.7
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 2.3
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 27 3.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.0
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 4.0
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 5.3
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 26 7.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.0
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 7.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.3
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.3
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 226 bits (553), Expect = 2e-60
Identities = 116/199 (58%), Positives = 144/199 (72%), Gaps = 1/199 (0%)
Frame = +2
Query: 191 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLAL 370
LYPIAVLIDELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL AL
Sbjct: 10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69
Query: 371 AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFV 550
A+QLG+F++ VGG E+AH LL PLE LAA EETVVRDKAV SL V S + LE++FV
Sbjct: 70 ADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFV 129
Query: 551 PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAP-VKAELRQHFRSLCQDDTPMVRRAAAYK 727
PLVQRL+ +WFTSR S+ GL+ Y + P VK LRQ F LC D+ PMVRR AA
Sbjct: 130 PLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATN 189
Query: 728 LGEFAKVVEIEYVKSDLIP 784
+F +V + + IP
Sbjct: 190 CAKFVFLVTKQEAIDEFIP 208
Score = 44.0 bits (99), Expect = 2e-05
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Frame = +2
Query: 194 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLAL 370
Y + + ++ LK+E+ ++RLN I KL + +G+E L+P + D+ V LA+
Sbjct: 362 YLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAI 421
Query: 371 AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETV--VRDKAVASLRAVAEHHSPQALEEH 544
+ + + G EF + + L ++ +E+ V +R+ A+ +LR + E + E
Sbjct: 422 IDYIPLLAQQL-GVEFFNEKMGNL-CMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATET 479
Query: 545 FVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPV-KAELRQHFRSLCQDDTPMVR 709
+P + + R + S P ++A V + ++ L D P +R
Sbjct: 480 IIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDPIPNIR 535
Score = 34.7 bits (76), Expect = 0.015
Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 4/204 (1%)
Frame = +2
Query: 185 ESLYPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGVE-RTKSELIPFLTETIYDED-E 355
E++ L + L N+D +RL S + ++A L + + L+ L + D
Sbjct: 201 EAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWR 260
Query: 356 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 535
+A +VG L+ P L E VR + E + +
Sbjct: 261 TRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIV 320
Query: 536 EEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAE-LRQHFRSLCQDDTPMVRR 712
E +P++Q L R + P++ E L F L +D+ P VR
Sbjct: 321 LEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRL 380
Query: 713 AAAYKLGEFAKVVEIEYVKSDLIP 784
KL KVV IE + L+P
Sbjct: 381 NIISKLEVVNKVVGIELLSQSLLP 404
Score = 33.9 bits (74), Expect = 0.027
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)
Frame = +2
Query: 371 AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFV 550
A F+ LV E +P +L+ ++ VR + + ++AE + H++
Sbjct: 187 ATNCAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYL 246
Query: 551 --PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMVRRAAAY 724
PL ++ W T A + + +K EL + F L +D VRRA A
Sbjct: 247 LQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIAT 306
Query: 725 KLGEFAKVVEIEYVKSDLIP 784
++ F ++++ V ++IP
Sbjct: 307 QIPGFCELLDKRIVLEEIIP 326
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.7
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = -3
Query: 777 RSLLTYSISTTFANSPSL*AAARRTIGVSS*QRERKC*RSSAFTGAETRG*HTLNSPQAD 598
R+ +Y+ +T+ A+S SL +++ + ++S SS+ + T T SP +
Sbjct: 58 RATTSYNYNTSSASSSSLTSSSAASSSLTS---------SSSLASSSTNS-TTSASPTSS 107
Query: 597 VLEVNQSPPARRCTSGTKCSS-SACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQC 421
L + + + +S T SS ++ + S+ A S T+ S + S+T+++++
Sbjct: 108 SLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNST 167
Query: 420 ANSPP 406
++ P
Sbjct: 168 TSATP 172
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 152 IKMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVER 301
+ + SD TDES++P+ + +++++D + +S L + A+A G +
Sbjct: 56 VNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQ 104
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 254 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLV 403
SIKK T + G+E +S ++ F + DE L+ Q+ S +NL+
Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2
Query: 218 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS 388
EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL +
Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 220 LIYENGNRIQ*FIRPGVARCHFYLLSFVLISIQSIRTQILTITFLCKIYQNEFFVK 53
LI++ N + +RPG L + + QS R + I+ +CK YQ + ++
Sbjct: 197 LIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVCPISEICKAYQEQNVIR 252
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -3
Query: 615 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRG 436
+SP + SP + +S + SSS+ S+++ S +++ S ++ SS++++ S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSS 199
Query: 435 GRRQCANSPPPT 400
++S P T
Sbjct: 200 SSSSSSSSVPIT 211
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 428 LLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLV 559
LLP + A ++ VRD A+A+ +A+ +P A++ VP V
Sbjct: 96 LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKA-IVPSV 138
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 5.3
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS-FINLVGGGEFAH 424
+NS KK + + V T E IPF + D+ A+ L F NLV GE A+
Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652
Query: 425 CLLPPLETL 451
CL LE +
Sbjct: 653 CLFHLLENV 661
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 298 LHAQSQRDRRQLLYR---VQTKLYILILQLIYENGNRIQ*FIRPG 173
LH Q R L Y+ + T+LY +L+ Y +GN I + +PG
Sbjct: 52 LHHQRSRYIYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPG 96
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 275 IALALGVERTKSELIPFLTETIYDEDEVL 361
+ L +E+ K E++PFL Y +EVL
Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 497 LRAVAEHHSPQALEEHFVPLVQRLAGGDWF 586
L AV HH A H+ VQ+L WF
Sbjct: 438 LNAVVYHHGTSASGGHYTVDVQQLDKSGWF 467
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 505 RCRAPQPASTRGTLCATSTAPCWRRLVHFKNIC 603
R A P T T C T T P WRR + +C
Sbjct: 625 RANATNPTPTC-TNCQTRTTPLWRRSPDGQPLC 656
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -3
Query: 579 SPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANSPPPT 400
S P + S + SS+ L S+T+ S ++ TT+ ST + ++ + +SP T
Sbjct: 262 SVPTQTIDSSSFTSSTPVSLTSSSTS-SSGSSQDSTTIDSTPSTIATSTLQPTTSSPITT 320
Query: 399 KLMKL 385
L
Sbjct: 321 SAPSL 325
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 319 DQLRFSPLHAQSQRDRRQLLYRVQTKLYI 233
D +F+P S R+ LLYR++ KL +
Sbjct: 153 DNEKFNPEVISSLASRQDLLYRIRDKLLV 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,686
Number of Sequences: 5004
Number of extensions: 57898
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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