Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a19
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   307   5e-84
AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    33   0.18 
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z47356-4|CAA87417.1|  431|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    29   5.0  
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    28   6.6  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   6.6  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  307 bits (754), Expect = 5e-84
 Identities = 149/199 (74%), Positives = 171/199 (85%)
 Frame = +2

Query: 158 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTET 337
           M+  +  TD++LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALGVERT++ELI FLT+T
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60

Query: 338 IYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 517
           IYDEDEVLL LAEQLG+F  LVGG +  HCLL PLE LA VEETVVRDKAV SLR +A+ 
Sbjct: 61  IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120

Query: 518 HSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDT 697
           HS  +LEEHFVP+++RLA GDWFTSRTSACGLFSV YPRVS  +K+EL+  FR+LC+DDT
Sbjct: 121 HSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDT 180

Query: 698 PMVRRAAAYKLGEFAKVVE 754
           PMVRRAAA KLGEFAKV E
Sbjct: 181 PMVRRAAAAKLGEFAKVFE 199



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 2/204 (0%)
 Frame = +2

Query: 179 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYD-EDE 355
           T   L PI + +  L ++  ++RLN I  L  +   +G  +  + L+P +     D +  
Sbjct: 363 TVSELLPIYMQL--LNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWR 420

Query: 356 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 535
           V LA+ + +    + +G   F   LLP            +R+ +   ++ + +    Q  
Sbjct: 421 VRLAIVQFMPLLASQLGQEFFDEKLLPLCLNWLTDHVFSIREASTLIMKELTQKFGGQWA 480

Query: 536 EEHFVPLVQRLAGGDWFTSR-TSACGLFSVCYPRVSAPVKAELRQHFRSLCQDDTPMVRR 712
             + VP +Q+L     +  R T    L ++        +  E+    + L +DD P VR 
Sbjct: 481 STNIVPKMQKLQKDTNYLQRMTCLFCLNTLSEAMTQEQILKEIMPIVKDLVEDDVPNVRF 540

Query: 713 AAAYKLGEFAKVVEIEYVKSDLIP 784
            AA  L    K +    + S++ P
Sbjct: 541 NAAKSLKRIGKNLTPSTLTSEVKP 564


>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 751 HNFRKLSKFVGSSAAYHRSIILTEGAEMLTKFCLHRC 641
           HN + L   VG   AYH +IIL E  E   +FC+  C
Sbjct: 320 HNIQALL-LVGGFEAYHSTIILAENREKYPEFCIPMC 355


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 751 HNFRKLSKFVGSSAAYHRSIILTEGAEMLTKFCLHRC 641
           HN + L   VG   AYH +IIL E  E   +FC+  C
Sbjct: 523 HNIQALL-LVGGFEAYHSTIILAENREKYPEFCIPMC 558


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -3

Query: 585 NQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANSPP 406
           ++SPPARR + G+  S        S   RS+  A S +   S +     GGRR  +NSPP
Sbjct: 206 SRSPPARRRSPGSDRSDRKSRS-ASPKKRSDKRARSESKSRSRS-----GGRRSRSNSPP 259


>Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical
           protein R11A8.4 protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 549 TKCSSSACGLWCSATARSEATALSR 475
           T C SS CG  CS+ A SEA  LSR
Sbjct: 530 THCESS-CGSSCSSNADSEANQLSR 553


>Z47356-4|CAA87417.1|  431|Caenorhabditis elegans Hypothetical
           protein T15H9.4 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 461 EETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDW 583
           E+ ++  +A AS  ++ +   P+A   HF+P+V  +    W
Sbjct: 33  EDKIISIRATASSASITKESVPEAPPTHFIPVVVTVEPDAW 73


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 588 VNQSPPARRCTSGTKCS-SSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQC 421
           V Q  PA +C S  + S SS+C     AT   + +  S     S  AN S  G  QC
Sbjct: 328 VQQQQPAAQCQSACQDSCSSSCQAAQPATTACQQSPQSPQNSCSCQANYSPCGNGQC 384


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 546 KCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANS 412
           +C S+ CG + S  + +  T + +  ++S+  N       QC NS
Sbjct: 226 QCQSNTCGQYQSTVSTTTTTPIIQIVLNSSVLNSGSECEPQCENS 270


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 769  LNIFNLHNFRKLSKFVGSSAAYHRSIILTEGAEMLTKFCLHRCRDTWVAYTK 614
            L+ FN H  R + K + S  + HR ++L E    L   CLH      V  T+
Sbjct: 1454 LSTFNAH--RPIKKLINSYES-HRMLLLLENCAQLPILCLHNTPAVGVEATR 1502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,812,172
Number of Sequences: 27780
Number of extensions: 340877
Number of successful extensions: 1249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)