Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a18
         (103 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    23   4.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    23   5.4  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    23   7.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    23   7.1  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 25  SLSTPTAPTRWYL*ANKQIFCV 90
           S+     PTRW   AN+ I C+
Sbjct: 394 SMKVDIGPTRWIPTANRTIRCI 415


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 23  ALSPHQRHQRVGIFRPINKFFVFGKKK 103
           +L+  Q+ Q+  + RP+N F ++ + +
Sbjct: 4   SLTAEQKDQKSSVKRPLNSFMLYRRDR 30


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 48  WCRWCGERAKKSN 10
           W R  G+RA+KSN
Sbjct: 822 WARCTGQRAQKSN 834


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 66  LKIPTRWCRWCGERAKKSN 10
           +K+P  WC+  G   KK+N
Sbjct: 888 VKVPVNWCKMSG--TKKTN 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,569
Number of Sequences: 5004
Number of extensions: 5202
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)