Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a18
         (103 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553...    25   6.2  

>12_02_0900 -
           24153734-24153943,24154461-24155110,24155198-24155334,
           24156595-24157223
          Length = 541

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 93  PNTKNLFIGLKIP 55
           PN KNLFIG+ +P
Sbjct: 248 PNMKNLFIGILVP 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,577
Number of Sequences: 37544
Number of extensions: 30079
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)