Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a18
         (103 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   4.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          19   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   7.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   7.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   7.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     18   9.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +2

Query: 20  FALSPHQRH 46
           F ++PHQ+H
Sbjct: 615 FVINPHQQH 623


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 17  FFALSPHQRHQRVGIFR 67
           F  ++   RHQ V +FR
Sbjct: 95  FTMMNKEMRHQAVVLFR 111


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 17  FFALSPHQRHQRVGIFR 67
           F  ++   RHQ V +FR
Sbjct: 95  FTMMNKEMRHQAVVLFR 111


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = -2

Query: 51  RWCRWCGERAKKSNCL 4
           RWC W     +K   L
Sbjct: 387 RWCTWSEGDLEKCKAL 402


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = -2

Query: 51  RWCRWCGERAKKSNCL 4
           RWC W     +K   L
Sbjct: 387 RWCTWSEGDLEKCKAL 402


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = -2

Query: 51  RWCRWCGERAKKSNCL 4
           RWC W     +K   L
Sbjct: 387 RWCTWSEGDLEKCKAL 402


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 61  DTNALVPLVW 32
           DT  L+P VW
Sbjct: 219 DTEGLLPPVW 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,083
Number of Sequences: 438
Number of extensions: 383
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)