Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a17
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29378-10|AAP40541.1|  975|Caenorhabditis elegans Adamts family ...    29   3.7  
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p...    29   3.7  
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p...    29   3.7  
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>U29378-10|AAP40541.1|  975|Caenorhabditis elegans Adamts family
           protein 2, isoform c protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 RPPCTLASCYQNVGIWGATSRKRACSELCPK 263
           R  C +A+C QN GIW   +    CS +C K
Sbjct: 852 RRSCNVATC-QNDGIWSLWNEWSDCSRVCGK 881


>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
           protein 2, isoform a protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 RPPCTLASCYQNVGIWGATSRKRACSELCPK 263
           R  C +A+C QN GIW   +    CS +C K
Sbjct: 852 RRSCNVATC-QNDGIWSLWNEWSDCSRVCGK 881


>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
           protease protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 RPPCTLASCYQNVGIWGATSRKRACSELCPK 263
           R  C +A+C QN GIW   +    CS +C K
Sbjct: 852 RRSCNVATC-QNDGIWSLWNEWSDCSRVCGK 881


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 611 SKTNTHYINVSMYALVTSD*CNRYSSNTLSSHTHRHHN 498
           S ++TH  + S+  L         S ++LSSH H+HHN
Sbjct: 109 SDSSTHPSSSSLAGLGALATAPSSSQSSLSSHPHQHHN 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,582,682
Number of Sequences: 27780
Number of extensions: 304554
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)