Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22a12
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 29 0.96
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.1
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 26 5.1
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.7
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 8.9
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 8.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 8.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 8.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.9
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.96
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -1
Query: 686 IGQTIYRIVYVVIHNNFYVFHELLFVKRVVFEEKIERFPFAAVGQIRFQHRI*IFRH-HV 510
IG+ Y VY I+ V +L+ +KR+ E++ + FP V +++ R+ RH ++
Sbjct: 283 IGEGTYGKVYKAINT---VTGDLVALKRIRLEQEKDGFPITTVREVKILQRL---RHKNI 336
Query: 509 IASVHVSSKQNVVLFVVN*LD 447
+ + + +++ V V +D
Sbjct: 337 VRLLEIMVEKSSVYMVFEYMD 357
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 595 SKRKSSGFHLPLLARYVSSTEFKSSVTT*SLAYTSRANKT 476
+K KS+ +H P VSS +S+ T AY A KT
Sbjct: 514 TKSKSAAYHYPATTETVSSKAARSATTP---AYVGGATKT 550
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 324 PNIMMNNNVLVHNFYDKLYAKHCKRMF 404
P + N+L F+D L+ +HC +F
Sbjct: 273 PTVQQFMNLLKKAFFDHLFGRHCLLLF 299
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 722 QFYQIGVLVYNFIGQTIYRIVYVVIHNNFYV 630
Q Y++ +YN + ++IYR + V N+ ++
Sbjct: 1301 QAYKVNYEIYNALIRSIYRFINVEAFNSLFI 1331
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 665 IVYVVIHNNFYVFHELLFVKRVVFEEKIERF 573
IVY + + F+V++ +L +++ FE+ I+ F
Sbjct: 297 IVYEGVPHCFWVYYPMLSLRKKYFEDAIDGF 327
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 604 VLYSKRKSSGFHLPLLARYVSSTEFKSSVTT*SLAYTS 491
++Y K SGF LP + R V + ++ TT +Y S
Sbjct: 482 IMYPHSKMSGFTLPTVNRTVMPSTSATATTTVYTSYYS 519
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/76 (18%), Positives = 34/76 (44%)
Frame = +3
Query: 174 LNEQLNCVMHKCVPVIFGTRLDKQFRETDDIDANNNINGTFMLDGRFLSFPNIMMNNNVL 353
L ++ + H+C + + E ID NN + ++ +++ + M+ L
Sbjct: 209 LQKENERMFHECKDDTYTWPSSYRLGEVVWIDINNELIPAIIVARNLINYESNQMDAVKL 268
Query: 354 VHNFYDKLYAKHCKRM 401
+ + + + Y HCK++
Sbjct: 269 ISDTFVEPYQYHCKQL 284
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 388 CLAYNLS*KLCTKTLLF 338
C YN+S K+CTK + F
Sbjct: 1317 CAVYNISTKICTKYIQF 1333
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 42 DFNELYDKIENKYKLKYTFDC 104
+FNE+++ ++Y LKY+ C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 42 DFNELYDKIENKYKLKYTFDCATNNNERILFGAIQERKSY 161
D NE++D E L D T +R++ Q KSY
Sbjct: 518 DLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSY 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,120
Number of Sequences: 5004
Number of extensions: 62848
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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