Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a12
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    30   2.3  
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434...    29   3.1  
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617...    29   4.0  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   5.3  
07_01_0244 + 1786009-1788048                                           28   9.3  
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388...    28   9.3  

>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 420  DQEKHINRAIQLVYDKQNDVLFARDVYASDYVVTEDLNSVLETYLANSGKWKPLDFLFEY 599
            D++KH ++ +  + D Q + + A     +D VVTE LN  +  +       +  D + E 
Sbjct: 1982 DEQKHDDKRVDFIIDTQVESIDAFQAEQTDSVVTEMLNDEVTQHEPEDSIPRTTDAMVEN 2041

Query: 600  NTLHKQQLVE 629
             T  K++  E
Sbjct: 2042 ITEIKEETEE 2051


>11_06_0151 -
           20643032-20643085,20643202-20643307,20643415-20643495,
           20643588-20643715,20643829-20643903,20644853-20645374,
           20646622-20646687,20647990-20648076,20648173-20648247,
           20648705-20648821,20648932-20649015,20649152-20649217,
           20649352-20649417,20650079-20650150,20650231-20650332,
           20650428-20650605,20650700-20650755,20653159-20653269,
           20653354-20653422,20653558-20653741,20653826-20653914,
           20654070-20654147,20654509-20654631,20654755-20654874,
           20654975-20655055,20655285-20655431,20655533-20655611,
           20657114-20657223,20659138-20659236,20659467-20659582,
           20659673-20659781,20659839-20660069,20660152-20660417,
           20661349-20661506,20661601-20661751,20661897-20661966,
           20662203-20662232
          Length = 1451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVYDKQNDVLFARDVYAS--DY 512
           N   +V    +KL+  H        NVD +   NR  +  YD Q DV   RDVYAS   Y
Sbjct: 301 NLRTVVEGTIEKLFEGHHINYIECINVDYKS--NRK-ESFYDLQLDVKGCRDVYASFDKY 357

Query: 513 VVTEDLNSVLETYLANSG 566
           V  E L    + +  N G
Sbjct: 358 VEVERLEGDNKYHAENHG 375


>07_01_0793 -
           6169661-6169936,6170942-6171025,6171473-6171590,
           6172917-6172987
          Length = 182

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 251 RNGRYRRKQQY*RNLYAGRQIFEFSQHNDEQQRFGAQFLRQVI 379
           R GR++++ ++ R L AG   F +  +NDE    G + L +V+
Sbjct: 7   RTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVL 49


>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 174 ERNTNKTCVLE*PQKVYVHCCL 109
           ++N+N+ C L  P  + VHCCL
Sbjct: 637 KQNSNQKCRLSNPHALVVHCCL 658


>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 336 MNNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVYDKQNDVLFARDVYASDYV 515
           M N  L    ++  Y+ +C+ +     +   K +   +  ++D    V+  RDV AS+ +
Sbjct: 438 MPNGSLDKYLHEHTYSSNCRTLGWPQRLHVIKCVAAGLLYLHDDWEQVIVHRDVKASNVL 497

Query: 516 VTEDLNSVL 542
           +  D+N  L
Sbjct: 498 LDADMNGRL 506


>02_05_0440 -
           29035974-29036356,29037977-29038133,29038260-29038824,
           29038866-29039191
          Length = 476

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 396 VCNVWRITCRRNCAPKRCCSSLC 328
           VC  WRI+ RRN  P++   S C
Sbjct: 39  VCRQWRISARRNPLPRQFPCSRC 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,991
Number of Sequences: 37544
Number of extensions: 350094
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)