Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a10
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.9  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    29   4.4  
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    28   7.6  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    28   7.6  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 355 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 263
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -3

Query: 694 NPIAKRPRVRMIPPTKL-GPSNALACTVGSMCVGASVDLASSDFGVVASSFLASVDELVS 518
           NP A R  + ++PP  L  P+ A A + G +CV A+   +  DF ++  S  A+   L S
Sbjct: 787 NPGACR-FIPLLPPKPLLSPAAAAASSRGGLCVAAA---SRRDFLLLVPSIAAASTVLQS 842

Query: 517 LFLAAS 500
           L L+AS
Sbjct: 843 LPLSAS 848


>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
            3404071-3404562,3404718-3404821,3404913-3404994,
            3405085-3405441,3405532-3406089,3406376-3406479,
            3406575-3406650,3406764-3406898,3407192-3407494,
            3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 102  ILAFVCLLKLAMCIALLAEQSGAQLGTTVPVPHDIPQAPGKPEENA 239
            + A V L + A+C   ++  + +  G ++PVP DI  AP  PEE A
Sbjct: 2295 VSAPVSLKESAICQEDISVHTESCPGKSLPVPEDI-SAPKSPEERA 2339


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 613 GSMCVGASVDLASSDFGVVASSFLASVDELVSLFLAASVWCSGTILVGSETG 458
           G  CVG + +   S+  V A++      E   L   ++VWC G +L+   TG
Sbjct: 319 GYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITG 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,593
Number of Sequences: 37544
Number of extensions: 304605
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)