Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a07
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   2.9  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   8.7  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   8.7  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 PMSAKNSLTAIVLSLNVEVIEKVSEALSEVHKKSRFRWKLVVLRSF 377
           P+SA +    I+ S  +++I+  +EA  E H K  + WK V +  F
Sbjct: 258 PLSALDGTATILQSRPMDIIDYEAEATGECHFKKTY-WKDVRVGDF 302


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 289 LK*SKRYRKHYQKFIRKVVFDGNW 360
           L+ S R+ K+Y+K   K++ D NW
Sbjct: 296 LEDSSRWTKYYKKVFEKILNDENW 319


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 6/28 (21%), Positives = 18/28 (64%)
 Frame = -2

Query: 691 SIYFSNFWANNVVFSVLEISAVNKSTLF 608
           +++ +N W  N+++   +++  N+S+ F
Sbjct: 270 TVFTTNDWEKNIIYDESDVNKTNQSSFF 297


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 348 RWKLVVLRSFHLEEVVKQ-SDLTGRVAIDFVII 443
           RWKL   R  +L  VVK+  D+   V  DFV++
Sbjct: 276 RWKLWRSRLANLRHVVKKHRDIDSEVLDDFVVL 308


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 211 SSSSDIFR*IKTMWSINHTDLVSIF 137
           S+SS+IFR  +T+  +NH +++  F
Sbjct: 263 STSSNIFRESRTLARLNHPNVIRFF 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,328
Number of Sequences: 5004
Number of extensions: 51732
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)