Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22a07
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 31 1.2
Z99271-1|CAB16471.1| 663|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 30 2.0
U21324-12|AAA62559.1| 227|Caenorhabditis elegans Hypothetical p... 29 4.7
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 29 4.7
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 29 4.7
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 29 4.7
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 8.1
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +3
Query: 282 LNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFHL--EEVVKQSDLTGRVAIDFVIIALDT 455
+NV V ++ L+E+ KKSRF + + LR+F + +++ ++ + ++F A +T
Sbjct: 28 VNVNVGAISAQILAEIAKKSRFSFSALALRAFPVVFDKLKDKNAILRDALVEFCDEAANT 87
Query: 456 SRLFCLEWAKKELSQVHPDLRRRRVVLVN 542
+ L +++ LS +P R++ + ++
Sbjct: 88 TPLSA--YSEAGLSNKNPQARQQTALFLS 114
>Z99271-1|CAB16471.1| 663|Caenorhabditis elegans Hypothetical
protein Y43F4A.1a protein.
Length = 663
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 504 HPDLRRRRVVLVNTSGLPVNAMAITAGELINFYTENNVDLLTADISNTENTTLLAQKLLK 683
HP RR + + + PV A I + + ++ LTA++ N NTTLL + +
Sbjct: 46 HPHRHRRGLPSSDPTSPPVEKFAPLR---IQLHYDKSIQNLTAEVQNFVNTTLLPE-AVG 101
Query: 684 YMEVSIGVR 710
Y E ++ VR
Sbjct: 102 YWENALRVR 110
>Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical
protein Y49E10.4 protein.
Length = 436
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 237 GPMSAKNSLTAIVLSLNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFHLEEVVKQS 404
GP +AK A+ S+ + +++ SE KKS + K+VVL + +++V S
Sbjct: 116 GPRTAKGIADAVKKSIEKSLEQRLKGKSSEKSKKSDKKGKVVVLTDSNFDKLVLNS 171
>U21324-12|AAA62559.1| 227|Caenorhabditis elegans Hypothetical
protein C35D10.3 protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 606 ENNVDLLTADISNTENTTLLAQKLLK 683
E+N+D+LT D+ T+ +T +QK+LK
Sbjct: 167 ESNMDILTPDVQPTQPSTGGSQKILK 192
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 204 LEEDAVIAPWVG-PMSAKNSLTAIVLSLNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFH 380
L+ED ++ W G + +I++ LN+ +I +S + + ++ WK R F
Sbjct: 631 LKEDHFLSEWTGKTIFGSYCCCSIIVLLNM-LIAMMSNSYQYISDQADIEWKFARSRLF- 688
Query: 381 LEEVVKQSDLTGRVAIDFVIIALDTSRLFCLEWAKKEL 494
++ D T + F I+ S +CL + K+L
Sbjct: 689 ----LEYFDDTATLPPPFNIVPSPKSIYYCLHYLTKKL 722
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 204 LEEDAVIAPWVG-PMSAKNSLTAIVLSLNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFH 380
L+ED ++ W G + +I++ LN+ +I +S + + ++ WK R F
Sbjct: 631 LKEDHFLSEWTGKTIFGSYCCCSIIVLLNM-LIAMMSNSYQYISDQADIEWKFARSRLF- 688
Query: 381 LEEVVKQSDLTGRVAIDFVIIALDTSRLFCLEWAKKEL 494
++ D T + F I+ S +CL + K+L
Sbjct: 689 ----LEYFDDTATLPPPFNIVPSPKSIYYCLHYLTKKL 722
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 204 LEEDAVIAPWVG-PMSAKNSLTAIVLSLNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFH 380
L+ED ++ W G + +I++ LN+ +I +S + + ++ WK R F
Sbjct: 631 LKEDHFLSEWTGKTIFGSYCCCSIIVLLNM-LIAMMSNSYQYISDQADIEWKFARSRLF- 688
Query: 381 LEEVVKQSDLTGRVAIDFVIIALDTSRLFCLEWAKKEL 494
++ D T + F I+ S +CL + K+L
Sbjct: 689 ----LEYFDDTATLPPPFNIVPSPKSIYYCLHYLTKKL 722
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +3
Query: 282 LNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFHL--EEVVKQSDLTGRVAIDFVIIALDT 455
+NV V ++ L+E+ KKSRF + + LR+F + +++ + + ++F A +T
Sbjct: 28 VNVNVGAISAQILAEIAKKSRFSFAPLALRAFPVVFDKLKDKKAILRDALVEFCDEAANT 87
Query: 456 SRLFCL-EWAKKELSQVHPDLRRRRVVLVN 542
+ L E LS +P R++ + ++
Sbjct: 88 TPLSAYSEAVITALSNKNPQARQQTALFLS 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,575
Number of Sequences: 27780
Number of extensions: 279366
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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