Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a07
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   7.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 730 FILGIPVLTPIDTSIYFSNF 671
           +I  IPV  PI   +Y+ NF
Sbjct: 107 YIEQIPVPVPIPVPVYYGNF 126


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 730 FILGIPVLTPIDTSIYFSNF 671
           +I  IPV  P+   +Y+ NF
Sbjct: 107 YIEQIPVPVPVPVPVYYGNF 126


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 730 FILGIPVLTPIDTSIYFSNF 671
           +I  IPV  P+   +Y+ NF
Sbjct: 107 YIEQIPVPVPVPVPVYYGNF 126


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 730 FILGIPVLTPIDTSIYFSNF 671
           +I  IPV  P+   +Y+ NF
Sbjct: 107 YIEQIPVPVPVPVPVYYGNF 126


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 730 FILGIPVLTPIDTSIYFSNF 671
           +I  IPV  P+   +Y+ NF
Sbjct: 340 YIEQIPVPVPVPVPVYYGNF 359


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 239 SNPWSNNCIFFQ 204
           SNPWS  C F Q
Sbjct: 923 SNPWSCRCKFLQ 934


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 708 LHLLTLPYISVISGLIMLYFLY*KYRQLINQHYSLYKSLL 589
           LHL    Y  ++SG + L F +   RQ + Q +   + L+
Sbjct: 132 LHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLV 171


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 164 NRPHCFYSTENVTTGRRCSYCSMGWTY 244
           N PH      + T    C  CSMG  Y
Sbjct: 339 NAPHMLGGRTDTTYRVVCDACSMGVKY 365


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 708 LHLLTLPYISVISGLIMLYFLY*KYRQLINQHYSLYKSLL 589
           LHL    Y  ++SG + L F +   RQ + Q +   + L+
Sbjct: 100 LHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLV 139


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 430 SMATLPVRSDCLTTSSK*NERRT 362
           S ATLP+   CL  ++K + R T
Sbjct: 363 SAATLPITFRCLEENNKIDSRVT 385


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 551 STSIYENYSPPSQI 510
           STS Y+ YSP S+I
Sbjct: 137 STSSYDPYSPNSKI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,382
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)