Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a05
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    77   4e-15
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    58   2e-09
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.77 
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    27   3.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.4  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   5.4  

>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
 Frame = +3

Query: 384 VESDTDEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDV-MIEPDQV 560
           VESD D++LLF +PF G   LK I V     ++ P    LF NR ++ FD +  ++  + 
Sbjct: 61  VESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATET 120

Query: 561 FELQKDTDG--ILEYCPKIVTFSSVSHLTMHFPKNFGA-ETTKIYYIGLKGEWTPSHRHG 731
           FE     +G  I E+  K   + ++ +L + F K+ G+ + T+I YIGL+G + P  +  
Sbjct: 121 FEFPLTFEGSHIFEFPVKTRLYQNLQNLNIFFTKSDGSDDPTQIAYIGLRGSFVP-FKGD 179

Query: 732 VTLCSYEVMPNLDDH 776
             +  YE  P   DH
Sbjct: 180 PVVTIYEATPRPSDH 194


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
 Frame = +3

Query: 369 NLPQFVESDTDEELLFNIPFTGNIKLKGIKV--ASEDTDSHPSKLRLFKNRP-NMTFDDV 539
           N   F+ESD DE+L+  IPF   +K+  I +     +T S P  ++L+ N+P N++F+D 
Sbjct: 156 NPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKLYINQPNNLSFEDA 215

Query: 540 -MIEPDQVFE-LQKDTDGILEYCP-KIVTFSSVSHLTMHFPKNFG-AETTKIYYIGLKGE 707
               P QV E +  + D      P + V F  V+ L +    N G  ETTKI  + L GE
Sbjct: 216 ESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLELFGE 275


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +3

Query: 459 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVS 632
           +AS DTDSH S   L K RP  N+ ++D  ++ D     + + D   +Y   I TF+ + 
Sbjct: 21  LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDDTWRSKRWEFD--YQY-SGISTFAHLP 77

Query: 633 HLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHG 731
           H+     +   +E   I  IG+  +   SHR G
Sbjct: 78  HVRCLVEQ---SEDFDIAIIGVPFDTAVSHRPG 107


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 17  FSPKRKEKIFIFYFVEILYLK*EYCNLPFVVVFPGVLKT*TNCDLIEKTT 166
           FS   + K  I + ++ L ++    +  F+ + PGV+KT  N D I+K T
Sbjct: 155 FSAYGQSKAAINFTMKELSVELADEHFTFISIHPGVVKTDMNADAIKKFT 204


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 714 VSILLLIQCNKFLLFLPQSSLE-SALLDVILKK 619
           V  LLL  C +FLL  P++ L+  + L+ I KK
Sbjct: 578 VLALLLESCGRFLLRYPETKLQMQSFLEAIQKK 610


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 132 VFNTPGNTTTNGKLQYSYFKYNISTK 55
           VFN   N T NGK   S F  N++ K
Sbjct: 398 VFNATVNFTRNGKFNTSIFSSNLNPK 423


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 639 TMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMP 761
           T+  PK+ GA    +Y  GL  E     + G+  C YE  P
Sbjct: 43  TITGPKSQGASQAMLYATGLNEEDMKKPQVGIASCWYEGNP 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,716
Number of Sequences: 5004
Number of extensions: 66512
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)