Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a05
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical p...   140   8e-34
AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-l...    44   2e-04
AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-l...    44   2e-04
AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical...    44   2e-04

>L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical
           protein ZK353.9 protein.
          Length = 208

 Score =  140 bits (340), Expect = 8e-34
 Identities = 63/141 (44%), Positives = 95/141 (67%)
 Frame = +3

Query: 378 QFVESDTDEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQ 557
           ++VESD D ELLFNIPFTG+++L G+ +  ++  SHP+K+RLFK+R  M+FDD  IE DQ
Sbjct: 63  EYVESDCDHELLFNIPFTGHVRLTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCSIEADQ 122

Query: 558 VFELQKDTDGILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVT 737
             +L++D  G+++Y  K   F ++ +L++    NFG + TKIYYIGL+GE+    R  + 
Sbjct: 123 EIDLKQDPQGLVDYPLKASKFGNIHNLSILVDANFGEDETKIYYIGLRGEFQHEFRQRIA 182

Query: 738 LCSYEVMPNLDDHKLKHLDSV 800
           + +YE    L DHK +  D+V
Sbjct: 183 IATYESRAQLKDHKNEIPDAV 203


>AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-like
           protein protein.
          Length = 284

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
 Frame = +3

Query: 390 SDTDEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVF 563
           SD DE+L+ ++PF   +K+  I +    +D  P K+++F N P  T FD+   +EP Q+ 
Sbjct: 153 SDCDEQLIISLPFNQPVKVHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQML 211

Query: 564 ELQKDT-DGILEYCP-KIVTFSSVSHLTMHFPKNFG 665
           E  + +  G  +    K V F +V ++      N G
Sbjct: 212 EFDESSIQGHGQVVALKYVKFQNVQNIQFFIENNVG 247


>AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-like
           protein TXL protein.
          Length = 284

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
 Frame = +3

Query: 390 SDTDEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVF 563
           SD DE+L+ ++PF   +K+  I +    +D  P K+++F N P  T FD+   +EP Q+ 
Sbjct: 153 SDCDEQLIISLPFNQPVKVHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQML 211

Query: 564 ELQKDT-DGILEYCP-KIVTFSSVSHLTMHFPKNFG 665
           E  + +  G  +    K V F +V ++      N G
Sbjct: 212 EFDESSIQGHGQVVALKYVKFQNVQNIQFFIENNVG 247


>AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical
           protein Y54E10A.3 protein.
          Length = 284

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
 Frame = +3

Query: 390 SDTDEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMT-FDD-VMIEPDQVF 563
           SD DE+L+ ++PF   +K+  I +    +D  P K+++F N P  T FD+   +EP Q+ 
Sbjct: 153 SDCDEQLIISLPFNQPVKVHSILIKGV-SDRAPKKVKVFINLPKTTDFDNATALEPTQML 211

Query: 564 ELQKDT-DGILEYCP-KIVTFSSVSHLTMHFPKNFG 665
           E  + +  G  +    K V F +V ++      N G
Sbjct: 212 EFDESSIQGHGQVVALKYVKFQNVQNIQFFIENNVG 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,721,256
Number of Sequences: 27780
Number of extensions: 363185
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)