Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22a04
(781 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 516 e-145
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 192 1e-47
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 190 4e-47
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 188 1e-46
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 186 5e-46
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 165 6e-46
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 179 8e-44
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 175 1e-42
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 168 2e-40
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 165 8e-40
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 162 8e-39
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 160 3e-38
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 154 3e-36
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 55 2e-06
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 54 5e-06
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 50 7e-05
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 48 2e-04
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 48 3e-04
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 45 0.002
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 44 0.003
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 44 0.006
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 42 0.017
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 42 0.017
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 40 0.070
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 40 0.070
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 40 0.070
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 40 0.092
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 39 0.16
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 39 0.16
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 38 0.21
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 38 0.21
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 38 0.37
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 36 1.1
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 35 2.6
UniRef50_A4BXQ6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.6
UniRef50_Q1ING2 Cluster: O-antigen polymerase precursor; n=1; Ac... 34 3.5
UniRef50_A3ETY4 Cluster: ATP-dependent exonuclease V, alpha subu... 34 3.5
UniRef50_Q5EUJ4 Cluster: Terminal acidic SANT 1; n=7; Poaceae|Re... 34 3.5
UniRef50_Q4QB05 Cluster: Putative uncharacterized protein; n=3; ... 34 4.6
UniRef50_A4R6U0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.6
UniRef50_Q54HS1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.1
UniRef50_Q4E2Z7 Cluster: Putative uncharacterized protein; n=2; ... 33 6.1
UniRef50_Q8YQH3 Cluster: Asl3856 protein; n=3; Nostocaceae|Rep: ... 33 8.0
UniRef50_Q52T94 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_A5FZT4 Cluster: Phosphate ABC transporter, periplasmic ... 33 8.0
UniRef50_A7RQA9 Cluster: Predicted protein; n=1; Nematostella ve... 33 8.0
UniRef50_Q4P5W5 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 516 bits (1273), Expect = e-145
Identities = 243/260 (93%), Positives = 248/260 (95%)
Frame = +1
Query: 1 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT 180
AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT
Sbjct: 675 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT 734
Query: 181 IGPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNL 360
IGPDDAPLLSLIYTGDGSIGHWAAD+SPLS SPIRGSAKTLNSFASTAIRFRDSHGNL
Sbjct: 735 IGPDDAPLLSLIYTGDGSIGHWAADESPLSPPPSPIRGSAKTLNSFASTAIRFRDSHGNL 794
Query: 361 LPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSV 540
LPFRQVHEY LCKPRAK + +NETDGVIQS+LR ASSDPTFFHRLDQRADF PQVSV
Sbjct: 795 LPFRQVHEYKLCKPRAK-IWPQHENETDGVIQSSLRAASSDPTFFHRLDQRADFAPQVSV 853
Query: 541 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTW 720
QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSS+ WRVSTW
Sbjct: 854 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSDAWRVSTW 913
Query: 721 ETSLMKSAPVLVIDEVYKMP 780
ETSLMKSAPVLVIDEVYKMP
Sbjct: 914 ETSLMKSAPVLVIDEVYKMP 933
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 192 bits (467), Expect = 1e-47
Identities = 111/260 (42%), Positives = 152/260 (58%), Gaps = 1/260 (0%)
Frame = +1
Query: 4 QASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTI 183
QA+ + +W LC PDSLLD R G S++H A + R + + +
Sbjct: 910 QATRLPKEALWDTLCATCPDSLLDPDTIRRVGLSTDHFVIFAHHYSLRCRFHTAHGVIEL 969
Query: 184 GPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNLL 363
G DA I G+ GH++ S L G A+ L A A+RF + G LL
Sbjct: 970 GMADATSSFDIDHTAGNPGHFSLRQSATPRLNG---GIAQDL---AVAALRF-NIDGTLL 1022
Query: 364 PFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLDQRADFPPQVSV 540
P R VH Y+ RAKNL+SNMKN DG++ + T +++ LD + D + SV
Sbjct: 1023 PIRSVHVYSTWPKRAKNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSV 1082
Query: 541 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTW 720
+LIHI GFPGCGK+FP+++LL+T F+ ++VAVPT ELR+EWK + LP+SE WR+ TW
Sbjct: 1083 RLIHIAGFPGCGKSFPISRLLRTPTFRN-FKVAVPTVELRAEWKAIIGLPTSEAWRIGTW 1141
Query: 721 ETSLMKSAPVLVIDEVYKMP 780
E+SL+KSA VLVIDE+YKMP
Sbjct: 1142 ESSLLKSARVLVIDEIYKMP 1161
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 190 bits (462), Expect = 4e-47
Identities = 111/259 (42%), Positives = 144/259 (55%), Gaps = 5/259 (1%)
Frame = +1
Query: 19 TPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTIGPDDA 198
+PQ +W+ L TL P S L P R G +E L AL++ +++ + G A
Sbjct: 692 SPQELWSALNTLMPLSALTSPSLRVLGLGTEELTALSYYYHFQAEIHSDNEIYRFGIQTA 751
Query: 199 PLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQV 378
+ G H+ A D PL A P R NS + + FR +GNLLP QV
Sbjct: 752 STKLCLIRDSGPPAHFTAPD-PLRAGSPPSRSQTNE-NSLRRSLLGFR-LNGNLLPIDQV 808
Query: 379 HEYTLCKPRAKNLASNMKNETDGVIQS--TLRTASSDPTFFHR---LDQRADFPPQVSVQ 543
H +T RAKNLASNMKN DG++ + L + SS P+ R LD DF +V
Sbjct: 809 HSFTSEPSRAKNLASNMKNGFDGILTTLAALSSLSSGPSPRDRIFTLDGICDFALPKTVD 868
Query: 544 LIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWE 723
LIH++GF GCGKT P+ QLLKT F +RV PTT LRSEWK M LP+ WR STWE
Sbjct: 869 LIHLSGFAGCGKTHPIQQLLKTPHFHN-FRVVTPTTNLRSEWKSDMALPAHHNWRFSTWE 927
Query: 724 TSLMKSAPVLVIDEVYKMP 780
++L+K A +LVIDE+YK+P
Sbjct: 928 SALLKHAEILVIDEIYKLP 946
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 188 bits (459), Expect = 1e-46
Identities = 112/260 (43%), Positives = 143/260 (55%), Gaps = 1/260 (0%)
Frame = +1
Query: 4 QASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTI 183
QA+ + + +W L PDS LD G S++H LA + ++ EH+ +
Sbjct: 746 QATRISREALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAEHVIQL 805
Query: 184 GPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNLL 363
G DA + +I GS G L + G A A+RF S G+LL
Sbjct: 806 GMADATSIFMINHTAGSAGLPGHFSLRLGDQPRALNGGLA--QDLAVAALRFNIS-GDLL 862
Query: 364 PFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLDQRADFPPQVSV 540
P R VH Y RAKNL SNMKN DGV+ S SD LD D SV
Sbjct: 863 PTRSVHTYRSWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIARPRSV 922
Query: 541 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTW 720
+LIHI GFPGCGKT P+T+LL T AF+ +++AVPTTELRSEWK+ MKL S+ WR TW
Sbjct: 923 RLIHIAGFPGCGKTHPITKLLHTAAFR-DFKLAVPTTELRSEWKELMKLSPSQAWRFGTW 981
Query: 721 ETSLMKSAPVLVIDEVYKMP 780
E+SL+KSA +LVIDE+YK+P
Sbjct: 982 ESSLLKSARILVIDEIYKLP 1001
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 186 bits (453), Expect = 5e-46
Identities = 106/259 (40%), Positives = 148/259 (57%), Gaps = 1/259 (0%)
Frame = +1
Query: 7 ASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTIG 186
A+ + +W LC + PDS LD R+QG S++H ALA+ + R ++ +G
Sbjct: 856 ATGFPKESLWQSLCGILPDSQLDNDQVRTQGLSTDHFCALAFLHSLRCTFLTDAGQQEMG 915
Query: 187 PDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNLLP 366
+DA + I GS GH+ S LL+ R +A + RF+ G +LP
Sbjct: 916 MEDATSIFTIRHTSGSPGHFELVRSSARPLLNGARPAADIVEHMK----RFKVD-GKILP 970
Query: 367 FRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLDQRADFPPQVSVQ 543
F + H YT RAKNL SNMKN DGV+ + +++ LD D +V
Sbjct: 971 FCEAHSYTSHVGRAKNLISNMKNGFDGVLANIDPQHTNEARDRLLSLDGSLDIAKPRTVS 1030
Query: 544 LIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWE 723
LIHI GF GCGK+FP+ QLLKTK + Y++AVPT ELR+EWKD +K ++ WR+ TWE
Sbjct: 1031 LIHIAGFAGCGKSFPICQLLKTKPCRN-YKIAVPTVELRNEWKDSLKSSPADRWRLGTWE 1089
Query: 724 TSLMKSAPVLVIDEVYKMP 780
+SL+KSA ++VIDEVYK+P
Sbjct: 1090 SSLLKSARIVVIDEVYKLP 1108
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 165 bits (400), Expect(2) = 6e-46
Identities = 86/169 (50%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Frame = +1
Query: 280 SPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQS 459
+PI + FA A+RFR + LP RQVH Y++ PRAKNL SN+KN DG++ S
Sbjct: 954 TPITEPTPATSPFALAALRFRLNR-QPLPIRQVHAYSIALPRAKNLVSNLKNGFDGLVSS 1012
Query: 460 TLRTASSDPT-FFHRLDQRADFPP-QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYR 633
+ ++ LD ADFPP + V LIHI GF GCGK++P+ QLL T+ F+ +R
Sbjct: 1013 LPASDRTNLLPLIQALDHTADFPPARPPVGLIHIAGFAGCGKSYPIQQLLATQTFR-HFR 1071
Query: 634 VAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAPVLVIDEVYKMP 780
V PTTELR EWK +KL WRVSTWET+L K A VLVIDEVYK+P
Sbjct: 1072 VVTPTTELRHEWKRALKLEGPSSWRVSTWETALAKRASVLVIDEVYKLP 1120
Score = 42.7 bits (96), Expect(2) = 6e-46
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +1
Query: 7 ASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTIG 186
AS + +WA LC +FP S L L G S+ HL ALA++ + V+ R GE + G
Sbjct: 822 ASGIPKEDLWATLCHIFPPSDLVSDL----GLSTNHLTALAFTYQWLVTLRSGELVQRHG 877
Query: 187 PDDAPL-LSLIYT---GDGSIGHWAADDSPLSALLSPIRGSA 300
AP + +T ++GH+A +PL+ + + G A
Sbjct: 878 LLSAPFAFEITHTPPVPPATVGHFAL-SAPLTPTSACLTGGA 918
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 179 bits (435), Expect = 8e-44
Identities = 97/255 (38%), Positives = 139/255 (54%), Gaps = 1/255 (0%)
Frame = +1
Query: 19 TPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTIGPDDA 198
T ++W LC + PDSLL + G S++HL L++ L++ G A
Sbjct: 723 TEHQLWEFLCDMLPDSLLTNSEVENFGLSTDHLTCLSYRLHFECIIHTSHSTIPYGIKKA 782
Query: 199 PLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQV 378
+ I DG H+ A L + GS + ++ A+RF+ + LPF
Sbjct: 783 STVIQISYIDGPPKHFKA----FIKLAAAAPGSNPSKSNLVRAALRFKYNDA-FLPFWDA 837
Query: 379 HEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTF-FHRLDQRADFPPQVSVQLIHI 555
H++T+ P AKNL SNMKN DG+ ++ P LD D +IHI
Sbjct: 838 HQHTISVPHAKNLISNMKNGFDGITSQLSGPSNKSPKMKLLELDATIDVSFPRKCDVIHI 897
Query: 556 TGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLM 735
GFPGCGK+ P+ +LL+T AF+ +R++VPT ELRSEWK + LP SEVWR+ TWET+L
Sbjct: 898 AGFPGCGKSHPIQKLLQTPAFR-HFRLSVPTNELRSEWKRDLNLPESEVWRLCTWETALF 956
Query: 736 KSAPVLVIDEVYKMP 780
KS+ +LV+DE+YK+P
Sbjct: 957 KSSNILVVDEIYKLP 971
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 175 bits (425), Expect = 1e-42
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 5/265 (1%)
Frame = +1
Query: 1 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT 180
+ A+N + ++W L + PDSLL P G SS+ L AL++ L+++V
Sbjct: 687 SDATNYSIDQLWDFLQEILPDSLLHNPEVDQFGLSSDILIALSYHLHFQVHVLSASGWLY 746
Query: 181 IGPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNL 360
G +A + G H++ + +P ++ + +RF+ + +
Sbjct: 747 YGLSNASTCYYLKHEFGPPAHYSVYRRIVGG--APKAANSNRCTDYGRLMLRFK-YNDSY 803
Query: 361 LPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRT--ASSDPTFFHR---LDQRADFP 525
LPFRQVH+++ AKNL SNMKN DG++ ST+ T +SS P+ R LD D
Sbjct: 804 LPFRQVHKFSPSLSHAKNLISNMKNGFDGIL-STIDTPSSSSGPSPRERIYALDSICDVA 862
Query: 526 PQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVW 705
V L+HI GFPGCGKT P+ QLLKT+AF +R++ PTTELR+EWK MK E W
Sbjct: 863 RTRCVDLVHIAGFPGCGKTHPLQQLLKTRAFSN-FRISCPTTELRNEWKADMKPNPEEFW 921
Query: 706 RVSTWETSLMKSAPVLVIDEVYKMP 780
+ STWE+SL+K P+LVIDE+YK+P
Sbjct: 922 KFSTWESSLLKKGPILVIDEIYKLP 946
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 168 bits (408), Expect = 2e-40
Identities = 100/257 (38%), Positives = 136/257 (52%), Gaps = 5/257 (1%)
Frame = +1
Query: 25 QRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTIGPDDAPL 204
+ +W L T+ PDS L + G S+EHL ALA N++ + GP D
Sbjct: 797 EHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIK 856
Query: 205 LSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHE 384
I G H+ SP LL + + A++ GN LPF + H
Sbjct: 857 RIDITHTTGPPSHF----SPGKRLLGSQPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHN 912
Query: 385 YTLCKPRAKNLASNMKNETDGVIQ----ST-LRTASSDPTFFHRLDQRADFPPQVSVQLI 549
+ AKNL SNMKN DGV+ ST RT + ++D D P + ++
Sbjct: 913 HPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVV 972
Query: 550 HITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETS 729
H GF GCGKT+P+ QLLKTK FK +RV+ PTTELR+EWK M+L S+ WR +TWE+S
Sbjct: 973 HFAGFAGCGKTYPIQQLLKTKLFK-DFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESS 1031
Query: 730 LMKSAPVLVIDEVYKMP 780
++KS+ +LVIDE+YKMP
Sbjct: 1032 ILKSSRILVIDEIYKMP 1048
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 165 bits (402), Expect = 8e-40
Identities = 108/263 (41%), Positives = 141/263 (53%), Gaps = 3/263 (1%)
Frame = +1
Query: 1 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALA--WSLNYRVSYRHGEHL 174
+QA+ + +WA LC PDS+LD + G +++H LA +SL R HG+
Sbjct: 728 SQATGLPTRTLWAALCANLPDSVLDDGSLATLGLTTDHFAVLARIFSLRCRFVSEHGDV- 786
Query: 175 NTIGPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHG 354
+G DA I G AD+ L AL+ S+ A RF
Sbjct: 787 -ELGLHDATSRFTIRHTPGHF-ELVADNFSLPALVG---ASSVPGADLAEACKRFVAPDR 841
Query: 355 NLLPFRQVHEYTLCKPRAKNLASNMKNETDGVI-QSTLRTASSDPTFFHRLDQRADFPPQ 531
+LPFR VH + RAKNL SNMKN DGV+ Q+ S F LD D
Sbjct: 842 TVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPLDPKSARERFLMLDSCLDIAAP 901
Query: 532 VSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRV 711
V+LIHI GF GCGK++P++ LL+T AF+ +++AVPTTELR EWK M + WR
Sbjct: 902 RRVRLIHIAGFAGCGKSWPISHLLRTPAFR-VFKLAVPTTELRDEWKALMDPRDQDKWRF 960
Query: 712 STWETSLMKSAPVLVIDEVYKMP 780
TWE+SL+K+A VLVIDEVYKMP
Sbjct: 961 GTWESSLLKTARVLVIDEVYKMP 983
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 162 bits (394), Expect = 8e-39
Identities = 104/269 (38%), Positives = 147/269 (54%), Gaps = 9/269 (3%)
Frame = +1
Query: 1 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT 180
++A++ + + +W L L PDSLL ++G S++H LA + + + + G
Sbjct: 744 SKATSISLEELWKTLAALLPDSLLLPEDITTRGLSTDHFVVLASAHSLKCIFISGALELE 803
Query: 181 IGPDDAP-LLSLIYTGDGS-IGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHG 354
+G +A ++ +T + + H+ AL RG+A A+ F+ +
Sbjct: 804 LGLHNAHHSFTIRHTSSANQLPHFELVADGTRAL----RGAASDTKELNRAALGFKFKNA 859
Query: 355 NLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHR-------LDQR 513
LPFR+VH YT RAKNL SNMKN DGV+ A+ DP H LD
Sbjct: 860 -FLPFRKVHVYTTEPDRAKNLISNMKNGFDGVL------ANIDPNHPHEARDRLLALDGS 912
Query: 514 ADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPS 693
+ V LIH+ GFPGCGKT P+ LLKT F Y+VAVPT ELR+EWK + L +
Sbjct: 913 IEVHAPRKVSLIHLAGFPGCGKTKPIQALLKTSLF-ADYKVAVPTVELRAEWKADLALKT 971
Query: 694 SEVWRVSTWETSLMKSAPVLVIDEVYKMP 780
+ WR+STWE+SL+K+A +LVIDEVYKMP
Sbjct: 972 GQAWRLSTWESSLLKTASILVIDEVYKMP 1000
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 160 bits (389), Expect = 3e-38
Identities = 99/266 (37%), Positives = 140/266 (52%), Gaps = 6/266 (2%)
Frame = +1
Query: 1 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT 180
A + + P R+W L + PDSLL S G S++ L AL+ N++ H E +
Sbjct: 816 APSLHINPHRLWTSLQEVLPDSLLSNSEIDSVGMSTDLLTALSHLFNFQAVV-HSERGDI 874
Query: 181 I-GPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGN 357
+ G A + IY +G H+ SP ++ + + A+RF+ G+
Sbjct: 875 LFGLQSAKTVIHIYHTNGPPAHY----SPPPKIIGSNSPPSSQQHPLEQAALRFK-YQGS 929
Query: 358 LLPFRQVHEYTLCKPRAKNLASNMKNETDGV---IQSTLR--TASSDPTFFHRLDQRADF 522
LPF H +T AKNL SNMKN DGV I+ ++R S F LD D
Sbjct: 930 HLPFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIALDAMIDL 989
Query: 523 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 702
+V + H+ GF GCGKT P+ LL T+ F +RV+ PTTELR+EWK M LP+S+
Sbjct: 990 ARPKTVSMFHLAGFAGCGKTKPLQSLLSTRPFHS-FRVSTPTTELRNEWKKDMNLPASQA 1048
Query: 703 WRVSTWETSLMKSAPVLVIDEVYKMP 780
+R TWE+SL+K +LVIDE+YK+P
Sbjct: 1049 FRFCTWESSLLKQTKILVIDEIYKLP 1074
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 154 bits (373), Expect = 3e-36
Identities = 95/263 (36%), Positives = 141/263 (53%), Gaps = 3/263 (1%)
Frame = +1
Query: 1 AQASNSTPQRVWAHLCTLFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNT 180
++ S + +W L ++ PDS L P + G S++ L AL + + V+ +
Sbjct: 782 SELSGHSESDLWLSLQSILPDSQLQNPEVSTLGLSTDILTALCFIYHSSVTLHAPSGVYH 841
Query: 181 IGPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIRFRDSHGNL 360
G + + +I+ G H++ SP A +P T + A+RF+ +G
Sbjct: 842 YGIASSSTVYVIHYQPGPPPHFSL--SPRLAASAP--RCNPTNSRLVRQALRFK-LNGEF 896
Query: 361 LPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRL---DQRADFPPQ 531
LPF Q + + AKNL SNMKN DG++ S+L +S P+ +L D D
Sbjct: 897 LPFTQAYAHESSITHAKNLISNMKNGFDGIM-SSLTDSSKGPSPREKLTTLDSLIDVAAP 955
Query: 532 VSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRV 711
V LIHI GF GCGKT P+ +LL+T F +R++ PT ELRSEWK M+ + VWR
Sbjct: 956 REVSLIHIAGFAGCGKTHPIQKLLQTSPFH-DFRISCPTNELRSEWKRDMQPTAENVWRF 1014
Query: 712 STWETSLMKSAPVLVIDEVYKMP 780
STWE+SL+K + +LVIDE+YK+P
Sbjct: 1015 STWESSLLKHSEILVIDEIYKLP 1037
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 55.2 bits (127), Expect = 2e-06
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Frame = +1
Query: 373 QVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIH 552
+ + T+ +PR+K ++K G T+ TA ++ + +D A SV +I+
Sbjct: 1002 KTRQMTVAQPRSKAYLRDLKRGNIG----TIPTAEAEQLDAY-IDSWAVNGFNRSVHVIY 1056
Query: 553 ITGFPGCGKT---FPVTQ-LLKTKAFKGQ-YRVAVPTTELRSEWKDHMKLPSSEVWRVST 717
G PG GK+ +T+ LLK + Q R+ PT LR+ +K P+ + V T
Sbjct: 1057 FCGLPGTGKSRRCMKMTERLLKENKYLAQTVRIVTPTDNLRNSVARQLKPPTESSYSVQT 1116
Query: 718 WETSLMKSA--PVLVIDEVYKMP 780
+ET + + + PVL++DE KMP
Sbjct: 1117 YETPIRQPSLGPVLIVDEYGKMP 1139
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 53.6 bits (123), Expect = 5e-06
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +1
Query: 403 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 582
RAK+ S++KN G + D TF + + P QV++ +IH G G GK+
Sbjct: 794 RAKSFGSDVKNLRVGALLKHQSKEWLD-TFGRKTEIE---PRQVALSVIH--GVGGSGKS 847
Query: 583 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAP-VLVI 759
+ + ++ + + V +PT ELR +W K+P + V+ T+E +L++ AP V+VI
Sbjct: 848 HAIQEWIRQNP-EEEIVVILPTNELRLDWT--RKIPKAPVYMFKTFEKALLQPAPSVVVI 904
Query: 760 DEVYKMP 780
D+ K+P
Sbjct: 905 DDYTKIP 911
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 50.0 bits (114), Expect = 7e-05
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 4/207 (1%)
Frame = +1
Query: 172 LNTIGPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFAS-TAIRFRDS 348
L +G D + +L ++ G+ GHW+ P + + GS F S A+ ++
Sbjct: 616 LAQVGRLDGTVHTLHWSVQGTQGHWSRA-VPNTPATTGSTGSTTGNGPFVSGNALPYQRF 674
Query: 349 HGNLLPFR-QVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFP 525
G++ Q ++T AK L + ++ E G I + AS P
Sbjct: 675 LGSVRQMGWQSFQFTPSLTFAKRLYNELEVEITGKITKIDKWASCHKNIEMAARNGCVRP 734
Query: 526 PQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHMKLPSSEV 702
+V I++ G GCGK+ V L++ G + V P +L EW + + SSE
Sbjct: 735 REV----IYLAGTAGCGKSSGVADLVQRHGNLGYWLSVVSPLNDLNEEWTEKITGLSSEQ 790
Query: 703 WRV-STWETSLMKSAPVLVIDEVYKMP 780
++ T E ++ V+V DE K+P
Sbjct: 791 RKIFKTHEKAMFAQPQVVVFDEAQKLP 817
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 48.4 bits (110), Expect = 2e-04
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 403 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 582
RA++ S++KN+ G I T + AS +++ + +V+ +IH G G GK+
Sbjct: 688 RARDYGSDVKNKRIGAITKT-QAASWGEYLTGKIESLTE--RKVAACVIHGAG--GSGKS 742
Query: 583 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLM-KSAPVLVI 759
+ + L+ V +PT ELR +W K+P++E + T+E +L+ + +++
Sbjct: 743 HAIQKALREIGKGSDITVVLPTNELRLDWS--KKVPNTEPYMFKTYEKALIGGTGSIVIF 800
Query: 760 DEVYKMP 780
D+ K+P
Sbjct: 801 DDYSKLP 807
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 47.6 bits (108), Expect = 3e-04
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 382 EYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITG 561
E T+ RA + S++KN G + S + F ++L Q +V +IH G
Sbjct: 815 EITMQHKRAGSYDSDIKNNRTGKLLSQMDNKWK-AAFAYKLQQE---DRKVCGTIIH--G 868
Query: 562 FPGCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK 738
G GK+F + + +++ K + V PT LR++W+ + + ++V++ T+E S+++
Sbjct: 869 CGGSGKSFAIQEWMRSLKEDQSVVTVVTPTVLLRNDWQTKLPILPADVFK--TFEKSVIQ 926
Query: 739 SA-PVLVIDEVYKMP 780
P+LV D+ K+P
Sbjct: 927 PCNPILVFDDYTKLP 941
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus
X|Rep: 158kDa replicase - Botrytis virus X
Length = 1413
Score = 44.8 bits (101), Expect = 0.002
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Frame = +1
Query: 403 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPP-QVSVQLIHITGFPGCGK 579
RA LAS++KN G + L D + D R Q++V +IH G G GK
Sbjct: 597 RAHALASDVKNAKIGKL---LTKQPQD--WLKSWDARCSTSELQLNVAVIHGAG--GSGK 649
Query: 580 TFPVTQLLKTKAFKGQYRVAV-PTTELRSEWKDHMKLPSSEVWRVSTWETSLMK-SAPVL 753
++ + + L+ K ++ V PT ELR++W K+P R+ T+E ++++ +
Sbjct: 650 SYSIQETLRNKRETLEHTTIVTPTVELRNDWSG--KIPRMAPDRIKTYEKAMLQPGTATV 707
Query: 754 VIDEVYKMP 780
++D+ K+P
Sbjct: 708 ILDDYGKLP 716
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 44.4 bits (100), Expect = 0.003
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Frame = +1
Query: 388 TLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFP 567
T+ RA S++KN G + + + + Q D ++ +IH G
Sbjct: 612 TMLSSRASAYTSDIKNNRTGKLLPAMNMPWKASLAY--VTQHGD--REIPGVVIHGAG-- 665
Query: 568 GCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSA- 744
GCGK++ + + L++ + V PT ELR++W + K+ S E + T+E +L++
Sbjct: 666 GCGKSYAIQKWLRSCSDPCAATVVCPTLELRNDWLN--KIGSYEQTNIKTFEKALIQPVN 723
Query: 745 PVLVIDEVYKMP 780
V++ D+ K+P
Sbjct: 724 NVVIFDDYTKLP 735
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 43.6 bits (98), Expect = 0.006
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Frame = +1
Query: 403 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 582
RAK AS++KN G++ + ++ TF + A P V +IH G G GK+
Sbjct: 745 RAKCYASDVKNGRTGLL-TRHQSDEWKETFSTLTEMEA---PSTWVSVIHGAG--GSGKS 798
Query: 583 FPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSA-PVLV 756
+ + +++ K+ + + + +PT ELR +W+ K+P + T+E +L++ + V
Sbjct: 799 QALQEYMRSLKSDQKEITIILPTNELRIDWEG--KVPHMNTYAFKTFERALIEPVEDICV 856
Query: 757 IDEVYKMP 780
D+ K+P
Sbjct: 857 FDDYGKLP 864
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 41.9 bits (94), Expect = 0.017
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = +1
Query: 388 TLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFP 567
TL RA + AS++KN G + A D + + V V + I G
Sbjct: 777 TLDHKRAGSYASDIKNSRTGKL-----LAQKDDKWKAAFAYKMQHEDHVVVGTV-IHGCG 830
Query: 568 GCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSA 744
G GK+ + ++T KA + V PT LR++W + + +E ++ T+E ++++
Sbjct: 831 GSGKSHTLQNWMRTLKADQSDVTVVTPTILLRNDWSTKLPILPAETFK--TFEKAIVQPC 888
Query: 745 -PVLVIDEVYKMP 780
PV++ D+ K+P
Sbjct: 889 NPVVIFDDYTKLP 901
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Foxtail mosaic virus
Length = 1335
Score = 41.9 bits (94), Expect = 0.017
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 523 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 702
P ++ + ++H G G GK++ + + ++ + V +PT ELR++WK KLP+ +
Sbjct: 593 PKEIHLAVLHGAG--GSGKSYALQEFMRNNS-DTPITVILPTNELRADWK--KKLPAHDK 647
Query: 703 WRVSTWETSLM-KSAPVLVIDEVYKMP 780
T+E +L+ + ++D+ K+P
Sbjct: 648 DTFMTYENALLCPRGDIFIMDDYTKLP 674
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3;
root|Rep: RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 39.9 bits (89), Expect = 0.070
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 403 RAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKT 582
RA+ AS++KN G ++ + + + RL + ++ ++ + +IH G G GK+
Sbjct: 595 RARAYASDIKNSRTG--KALHKESQNWKETQTRLTETSE--TRLGLSVIHGAG--GSGKS 648
Query: 583 FPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKS-APVLVI 759
+ +L+ V +PT ELR +W KLP + + T+E + + S APV++
Sbjct: 649 QALQTMLRNHPDL-PVEVVLPTNELRXDWL--RKLPHNPPEQFRTFERAFVSSTAPVVIF 705
Query: 760 DEVYKMP 780
D+ K+P
Sbjct: 706 DDYGKLP 712
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White
clover mosaic virus (strain O) (WCMV)
Length = 1294
Score = 39.9 bits (89), Expect = 0.070
Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Frame = +1
Query: 370 RQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLI 549
R+ +L RA+ S++KN G + L+ S D L + + +V + +I
Sbjct: 513 REPTTVSLDNHRARAYGSDVKNLRIGAL---LKKQSKDWLASFAL-KTENIEREVLMSVI 568
Query: 550 HITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHMKLPSSEVWRVSTWET 726
H G G GK+ + +++ + ++ + +PTT+LR++W + K+P+ E T+E
Sbjct: 569 HGAG--GSGKSHAIQTWMRSLNRRDRHVTIILPTTDLRNDWTN--KVPNLEQANFKTFEK 624
Query: 727 SLMK-SAPVLVIDEVYKMP 780
+L + ++V D+ K+P
Sbjct: 625 ALCQPCGKIIVFDDYSKLP 643
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Plantago asiatica mosaic potexvirus (P1AMV)
Length = 1385
Score = 39.9 bits (89), Expect = 0.070
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +1
Query: 397 KPRAKNLASNMKNETDG-VIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGC 573
+ RA+ S++KN G + +T T Q ++++ +IH G G
Sbjct: 617 RTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQT-----ELAISVIHGAG--GS 669
Query: 574 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKS-APV 750
GK+ + LL+ + V +PT ELR +W KLP + + T+E + + S +PV
Sbjct: 670 GKSQALQTLLR-QDHSLPIEVVLPTNELRLDWL--KKLPHNPPEQFRTFERAFVSSHSPV 726
Query: 751 LVIDEVYKMP 780
++ D+ K+P
Sbjct: 727 VIFDDYGKLP 736
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 39.5 bits (88), Expect = 0.092
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 529 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWR 708
++++ +IH G G GK+ + L+K + V +PT ELR +W KLP + +
Sbjct: 814 ELAISVIHGAG--GSGKSQALQTLIKDNP-ELDITVVLPTNELRLDWL--RKLPKAPQEK 868
Query: 709 VSTWETSLM-KSAPVLVIDEVYKMP 780
T+E +L+ P+++ D+ K+P
Sbjct: 869 FKTFEKALLAPPTPIVIFDDYGKLP 893
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 38.7 bits (86), Expect = 0.16
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 553 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSL 732
I G G GK+ + Q + + +G V +PT EL +W + K P++ T+E +L
Sbjct: 937 IHGAGGSGKSHLLQQWVSSTE-RGNVVVILPTIELLRDWLN--KCPTTPKDSFKTFEKAL 993
Query: 733 MK-SAPVLVIDEVYKMP 780
++ SAPV+++D+ K+P
Sbjct: 994 VQNSAPVVIMDDYSKLP 1010
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 38.7 bits (86), Expect = 0.16
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 523 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 702
P Q + +IH G G GK+ + + ++ + +PT ELR++WK KLP+ +
Sbjct: 627 PRQTLISVIHGAG--GSGKSRALQEYMRNNK-EDPIVTILPTNELRADWK--AKLPAHDP 681
Query: 703 WRVSTWETSLM-KSAPVLVIDEVYKMP 780
T+E +L+ V+++D+ K+P
Sbjct: 682 DMFMTFENALLIPKGNVVIMDDYTKLP 708
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 38.3 bits (85), Expect = 0.21
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 553 ITGFPGCGKTFPVTQLLKTKAFKGQY-RVAVPTTELRSEWKDHM-KLPSSEVWRVSTWET 726
I G G GK+ + L+T V VPT ELR++W + + KLP + T+E
Sbjct: 709 IHGCGGSGKSQALQNFLRTLGDTNDCCTVVVPTVELRNDWVNKLCKLPME---HIKTFEK 765
Query: 727 SLMKSA-PVLVIDEVYKMP 780
++++ PV++ D+ K+P
Sbjct: 766 AMIQPGFPVVIFDDYTKLP 784
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep:
Replicase - Hosta virus X
Length = 1507
Score = 38.3 bits (85), Expect = 0.21
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 634 VAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKSAP-VLVIDEVYKMP 780
V PT ELR +W D KLP SE V T+E +LM A ++ D+ K+P
Sbjct: 798 VVCPTNELRRDWID--KLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLP 845
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Strawberry mild yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 37.5 bits (83), Expect = 0.37
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +1
Query: 553 ITGFPGCGKTFPVTQLLKT-KAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETS 729
I G G GK+ + +++ K + V +PT ELR++W + K+P + TWE
Sbjct: 603 IHGAGGSGKSQRLQDWMRSLKKNSRECTVILPTAELRTDWVN--KVPKQSLDTFKTWEKG 660
Query: 730 LMKSA-PVLVIDEVYKMP 780
L++ V+++D+ K+P
Sbjct: 661 LVQPPNRVVILDDYGKLP 678
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +1
Query: 634 VAVPTTELRSEWKDHM-KLPSSEVWRVSTWETSLMKSAPVLVI-DEVYKMP 780
+ VPT L+ +W++ M + PS + V T+E ++M+SAP +V+ D+ K+P
Sbjct: 19 IIVPTRVLQQDWRNKMTEFPS---FLVQTYEAAMMESAPQMVVFDDYGKLP 66
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 34.7 bits (76), Expect = 2.6
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Frame = +1
Query: 382 EYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITG 561
E+ + RAK LA + + GV+QS + A ++ F R + P V++ I G
Sbjct: 1118 EFKIEHARAKILADSFHSGGTGVLQSEIFNAKAN--FAERFKR----PDGTLVEICVICG 1171
Query: 562 FPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSS------EVWRVSTWE 723
G GK+ +L++ + K VA P L E + +++P + E WR+ T+E
Sbjct: 1172 VFGSGKSHGFLELMQRSSGKIVDFVA-PRRALSDEMQKKLEIPKTKRKAGQENWRICTFE 1230
Query: 724 TSLMKSA 744
L + A
Sbjct: 1231 KFLDRCA 1237
>UniRef50_A4BXQ6 Cluster: Putative uncharacterized protein; n=1;
Polaribacter irgensii 23-P|Rep: Putative uncharacterized
protein - Polaribacter irgensii 23-P
Length = 255
Score = 34.7 bits (76), Expect = 2.6
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -2
Query: 666 FGTQLGGGNS-DSVLAFKCFGFEKLSDRESFPTTRKSSNVNELHGNLWGEVGSLIKAMEK 490
FG G N+ S LAF + L RE +T++ + + NL+ + S +K +E+
Sbjct: 52 FGDMFGAANALFSGLAFAGIIYTILLQREDLKSTKEEFKIQQFETNLYNLINSHLKIVEQ 111
Query: 489 SGV**CRSEGGLYNSISLIFHV 424
GV + + G+Y +F +
Sbjct: 112 LGV---KGDNGIYIKGREVFRI 130
>UniRef50_Q1ING2 Cluster: O-antigen polymerase precursor; n=1;
Acidobacteria bacterium Ellin345|Rep: O-antigen
polymerase precursor - Acidobacteria bacterium (strain
Ellin345)
Length = 409
Score = 34.3 bits (75), Expect = 3.5
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -2
Query: 738 FHERGFPG*DSPNFAGREFHVVFPFGTQLGGGNSDSVLAFKCFGFEKL 595
F+ FP + FAG +H VF LG S V+ F CFGF++L
Sbjct: 142 FYPASFP---ATEFAGAAWHGVFSHKNLLGRTMSLGVVTFLCFGFKRL 186
>UniRef50_A3ETY4 Cluster: ATP-dependent exonuclease V, alpha
subunit; n=1; Leptospirillum sp. Group II UBA|Rep:
ATP-dependent exonuclease V, alpha subunit -
Leptospirillum sp. Group II UBA
Length = 575
Score = 34.3 bits (75), Expect = 3.5
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 436 ETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKT-K 612
E D Q LR AS RL + A F P +TG PG GKT+ ++LK K
Sbjct: 143 EPDARDQEILRLASGGVEDRRRLLEGALFRP-----FFLLTGGPGTGKTYTSAEILKVWK 197
Query: 613 AFKGQYR--VAVPTTELRSEWKDHMKLPSSEV 702
+ + VA PT + +++ + LP +V
Sbjct: 198 ILRPEAHLVVATPTGKAARRFREALSLPEVDV 229
>UniRef50_Q5EUJ4 Cluster: Terminal acidic SANT 1; n=7; Poaceae|Rep:
Terminal acidic SANT 1 - Zea mays (Maize)
Length = 422
Score = 34.3 bits (75), Expect = 3.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 181 IGPDDAPLLSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKT 306
IGP L++ GDG++ W A D + A L + G AKT
Sbjct: 174 IGPSRLEALAMRIVGDGAVDTWGAADEAMRANLRILAGEAKT 215
>UniRef50_Q4QB05 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 285
Score = 33.9 bits (74), Expect = 4.6
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +1
Query: 523 PPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEV 702
PP V+ +LI +TG PGCGK+ Q AF G A+P+ +R + +LP S+V
Sbjct: 67 PPLVTPRLIILTGPPGCGKS---VQASHVAAFLGGVHCALPSL-VRDAFSGG-RLPGSKV 121
>UniRef50_A4R6U0 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 301
Score = 33.9 bits (74), Expect = 4.6
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +3
Query: 483 PHFFPSP*SKSRLPP--TSFRAAHSHYW--ISWLWENFPCHSASQNQSI*RPVQSRCSHH 650
PH P P S S LPP T A S W +SW W + ++ + Q+ + + H
Sbjct: 44 PH--PMPASSSTLPPPQTPSSPASSSSWNPLSWRWSSTASQTSPEPQTPRPAPRPQLDEH 101
Query: 651 RVAFRMERPHETPFQ--RSLASLNLGNLSHEIST 746
RV + R +P Q S A ++HEI T
Sbjct: 102 RVVSSIPRSSASPSQPPGSAAPPPSRPVNHEIET 135
>UniRef50_Q54HS1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 815
Score = 33.5 bits (73), Expect = 6.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 343 DSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSD 483
+++GN P +H + +PR +L +N+ +E D V+ S+ + SD
Sbjct: 119 NNYGNNTPVNYIHNNSTPRPRHSSLRTNLSDEEDSVLYSSDDSEESD 165
>UniRef50_Q4E2Z7 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 422
Score = 33.5 bits (73), Expect = 6.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +1
Query: 274 LLSPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNET---D 444
L+ IRG A TLN + FRD+ G + H LC R + +N K E D
Sbjct: 13 LIDAIRGGAVTLNRINDEIVVFRDARGGVEWHCTRHAGRLCSYRHQKTGANGKAEISRFD 72
Query: 445 GVIQSTLRTASSDP 486
V + T++ P
Sbjct: 73 AVKRMTVQPEEKSP 86
>UniRef50_Q8YQH3 Cluster: Asl3856 protein; n=3; Nostocaceae|Rep:
Asl3856 protein - Anabaena sp. (strain PCC 7120)
Length = 89
Score = 33.1 bits (72), Expect = 8.0
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 103 SSEHLEALAWSLNYRVSYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAADDSPL 267
+ E L A W ++ R G+ + T+ +AP+LS+ ++ DG A+DD+ +
Sbjct: 6 NGEILAAANWDSTVKLWSREGKLIKTLNGHEAPVLSVSFSPDGQTLASASDDNTI 60
>UniRef50_Q52T94 Cluster: Putative uncharacterized protein; n=1;
Vibrio cholerae non-O1/non-O139|Rep: Putative
uncharacterized protein - Vibrio cholerae
non-O1/non-O139
Length = 320
Score = 33.1 bits (72), Expect = 8.0
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 553 ITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSEWKDHMKLPSSEVWRVSTWETSL 732
ITG GCGKT V Q+L + Q +TE + + + VW T+
Sbjct: 69 ITGPTGCGKTSAVEQVLARLNYPAQSYTCGGSTEYMDLVGQYTLVNGNTVWMDGVL-TTA 127
Query: 733 MKSAPVLVIDEV 768
M+ VL+++E+
Sbjct: 128 MREGHVLILNEI 139
>UniRef50_A5FZT4 Cluster: Phosphate ABC transporter, periplasmic
phosphate-binding protein precursor; n=1; Acidiphilium
cryptum JF-5|Rep: Phosphate ABC transporter, periplasmic
phosphate-binding protein precursor - Acidiphilium
cryptum (strain JF-5)
Length = 359
Score = 33.1 bits (72), Expect = 8.0
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +1
Query: 73 DGPLERSQGFSSEHLEALAWSLNYRVSYRHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAA 252
+G L+++ G + L A S+NY + +G HL G P+L+ IY+ G I +W
Sbjct: 96 NGQLKQNPGILNIPLAISAQSINYNIPGLNGHHLVFSG----PVLADIYS--GKITNW-- 147
Query: 253 DDSPLSALLSP 285
DSP A L+P
Sbjct: 148 -DSPAIAKLNP 157
>UniRef50_A7RQA9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 546
Score = 33.1 bits (72), Expect = 8.0
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 445 GVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKTKAFKG 624
GV+QS L + D T H + R + + H+ PG GK+ P LL + F+
Sbjct: 360 GVLQSPLDNIADDQTVIHGTESRKESGTSKTGSTEHMAFVPGSGKSKPKKNLL-SPGFES 418
Query: 625 QYR-VAVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMKS 741
R +++P + S K ++ ++E+W+ ++ L +S
Sbjct: 419 LARYLSLPENPI-STRKTGFEV-TNELWQQQPVQSGLAES 456
>UniRef50_Q4P5W5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1712
Score = 33.1 bits (72), Expect = 8.0
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 755 TKTGADFMREVSQVETRQT--SLEGSFMWS-FHSERNSVVGTATLY 627
TK GAD E + T ++ GS +WS FH++R+S TAT +
Sbjct: 1432 TKVGADLEDEAPSPNLQDTPDTMAGSEIWSAFHADRSSTASTATTW 1477
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,128,992
Number of Sequences: 1657284
Number of extensions: 18382101
Number of successful extensions: 50838
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50787
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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