Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a04
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.4  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   8.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 547 IHITGFPGCGKTFPVTQLLK 606
           IH    PGCGK +  T  LK
Sbjct: 314 IHSCHIPGCGKVYGKTSHLK 333


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 555 YWISWLWENFPCHSASQNQSI*RPVQSRCSHHRVAFRMERPHETPFQ 695
           Y I+ +W   P       +S+ R  Q +CSH  V   +   H+  ++
Sbjct: 303 YAIATMWHETPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYE 349


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 DDAPLLSLIYTGDGSIGHWAADDS 261
           D +P+L+L  +G GS G    DD+
Sbjct: 209 DHSPVLNLSKSGGGSAGSLEDDDN 232


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +3

Query: 555 YWISWLWENFPCHSASQNQSI*RPVQSRCSHHRVAFRMERPHETPFQ 695
           Y    +W   P       +S+ R  Q +CSH  V   +   H+  ++
Sbjct: 536 YACGTMWHETPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYE 582


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +3

Query: 555 YWISWLWENFPCHSASQNQSI*RPVQSRCSHHRVAFRMERPHETPFQ 695
           Y    +W   P       +S+ R  Q +CSH  V   +   H+  ++
Sbjct: 536 YACGTMWHETPEEMMEFLKSVFRLDQDQCSHRIVREHLGLKHDNYYE 582


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 163 GEHLNTIGPDDAPLLSLIYTGDGSI 237
           GE+   +  DD  L  + YT DG+I
Sbjct: 218 GEY-GVVSHDDGSLRGVRYTADGTI 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,082
Number of Sequences: 336
Number of extensions: 4364
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)