Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22a04
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 28 1.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 2.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 4.0
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.3
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 5.3
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 26 7.0
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 7.0
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 26 7.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.2
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 9.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 9.2
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 743 ADFMREVSQVETRQTSLEGSFMWSFHSE 660
AD++ EV ++ R +LE +W HSE
Sbjct: 974 ADYVNEVKRIIQRNANLEFEAIWKGHSE 1001
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 625 QYRVAVPTTELRSEWKDHMKLPSSEVWRVS 714
Q + A E EW DH PS + WR+S
Sbjct: 40 QNKNASSVLEYSGEWADHDFFPSPDNWRMS 69
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 397 KPRAKNLASNMKN-ETDGVIQSTLRTASSDPTF 492
KP KN N K+ E DGV + ++SDP F
Sbjct: 27 KPSKKNGTKNGKDKEVDGVTKDLSELSTSDPIF 59
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 430 KNETDGVIQSTLRTASSDPTFFHRLDQRADFP 525
KNET + +S + AS DP R D+ P
Sbjct: 556 KNETFDIYKSVMNEASLDPLNMSRKDRELSLP 587
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 541 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELR 660
QL+ I+G GCGK+ + L + K V + TE R
Sbjct: 648 QLLIISGDTGCGKSTQIPAFLLENSTKNGKAVKIYVTEPR 687
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 529 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTT 651
+ + + GFP GK+ +TQL T++ Y TT
Sbjct: 60 RTGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTT 100
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 335 GLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYNPPSERHHQTPLFS------ 496
G++ +TA++ HF+ + T++V + K + L L+N R H T + S
Sbjct: 1638 GIDHVTAVASHFNVWPDTQTVMTDAKSTTLASLLLLASLHN---RRIHITNVSSKDDLNL 1694
Query: 497 IALIKEPTSPHKFPCSSFTL 556
I L K+ + P F S ++L
Sbjct: 1695 IVLAKQRSLPVTFDVSVYSL 1714
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 365 HFDKFMSTRSVSLEQKIWPQT*KMRLMELYNPPSERHHQTPLFSI 499
H+++F + P T K+ ELY P S + Q P FS+
Sbjct: 166 HYEQFANNDVTESAVDDHPATRKLSRDELYLPISPNNAQEPKFSV 210
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 637 AVPTTELRSEWKDHMKLPSSEVWRVSTWETSLMK 738
A+ ++ EW++H PS E WR + ++ K
Sbjct: 40 ALDPSDYWGEWENHEFFPSPEHWRFPIYTIAIDK 73
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 776 ILYTSSITKTG--ADFMREVSQVETRQTSLEGSFMWSFHSERNSVVGT 639
+L + S KT AD E + + TS + W HSE N +GT
Sbjct: 312 VLLSGSYDKTAKIADLRLEEAPSSFQVTSDVENVAWDQHSENNFFIGT 359
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 547 IHITGFPGCGKTFPVTQLLKT 609
I + G+PGCGKT+ + + T
Sbjct: 643 ILLFGYPGCGKTYLASAISST 663
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,702
Number of Sequences: 5004
Number of extensions: 73887
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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