Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a04
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821...    29   3.1  
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498...    29   4.1  
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308...    29   5.5  
07_03_0663 - 20451445-20452442,20452528-20452729                       29   5.5  
05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846     29   5.5  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    29   5.5  
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    28   7.2  

>05_04_0347 +
           20479682-20479753,20480136-20480813,20481143-20482195,
           20482345-20482406,20482491-20482541,20482635-20482719,
           20483253-20483342,20483472-20483563,20483704-20483728
          Length = 735

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 205 LSLIYTGDGSIGHWAADDSPLSALLSPIRGSAKTLNSFASTAIR 336
           L+L Y+GDGS      +D P +   SP  GS   L+S   T ++
Sbjct: 98  LNLDYSGDGSDSSQTGEDVPTADQASP-SGSGTLLDSMVQTGVQ 140


>07_01_0664 +
           4979892-4979931,4980040-4980236,4982340-4982723,
           4983499-4983549,4983659-4983741,4983818-4983917,
           4984410-4984488,4984957-4985080,4985605-4985711,
           4985810-4985938,4987004-4987089,4987200-4987367,
           4987477-4987637,4987721-4987752,4987866-4988047,
           4988386-4988465,4988885-4988950,4989060-4989349,
           4990433-4990540,4991521-4991618,4991680-4991782,
           4992269-4992345,4992449-4992520,4992579-4992670,
           4992909-4992989,4993290-4993392,4994334-4994492,
           4994696-4995085
          Length = 1213

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +1

Query: 430 KNETDGVIQSTLRTASSDPTFFHRLDQRADFPPQVSVQLIHITGFPGCGKTFPVTQLLKT 609
           K + +G +Q+   TA   PT         D  P+    ++   G PGC K+    ++L T
Sbjct: 749 KRDEEGDLQAERGTAPPSPT-----STSLDVVPKAEGLIVFFPGIPGCAKSALCKEILTT 803

Query: 610 KAFKGQYR 633
               G  R
Sbjct: 804 PGGLGDNR 811


>12_02_0027 +
           12427525-12427698,12430082-12430150,12430763-12430823,
           12431147-12431264,12431346-12431422,12432881-12432996,
           12433227-12433661
          Length = 349

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 676 GLSIRNATRWWEQRLCTG 623
           G+SI N T WW+  L TG
Sbjct: 83  GISIENQTHWWQMSLRTG 100


>07_03_0663 - 20451445-20452442,20452528-20452729
          Length = 399

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 517 RLFDQGDGKKWGLMMPFG 464
           R+ ++GDG +WG+M+ FG
Sbjct: 362 RMEEEGDGAEWGVMLGFG 379


>05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846
          Length = 361

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 196 APLLSLIYTGDGSIGHWAADD--SPLSALLSPIRGSAKTLNSFASTA 330
           A L SL+  G+ + G  A +   SP S LLSP+RGS K   S A++A
Sbjct: 45  AQLSSLLLPGEAAAGTAAMETLLSP-STLLSPLRGSKKKPASPAASA 90


>03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,
            2416288-2416365,2416880-2416999,2418021-2418091,
            2418808-2418900,2419242-2419311,2420236-2420436,
            2421345-2421557,2422354-2422440,2422441-2422652,
            2422901-2423042,2423424-2423592,2424050-2424126,
            2424393-2424563,2425095-2425171,2425299-2425401,
            2426066-2426185,2426301-2426444,2426826-2426975,
            2427398-2427541,2427816-2427903,2428672-2428799,
            2429329-2429533,2429843-2430015,2430174-2430392,
            2430490-2430684
          Length = 1213

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 196  APLLSLIYTGDGSIGHWAADDSPLSALLS 282
            AP L LI   DG + H  +D++P + LLS
Sbjct: 962  APWLGLIPGNDGQVKHAYSDNTPFTTLLS 990


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 550 HITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTT 651
           H+  FP CGK F     LK+   KG  +   P T
Sbjct: 176 HVCPFPACGKRFTSDSKLKSHV-KGHEKTGTPIT 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,623,942
Number of Sequences: 37544
Number of extensions: 542395
Number of successful extensions: 1528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)