Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a04
         (781 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.6  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   4.6  
Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.        24   6.1  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.0  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 1    AQASNSTPQRVWAHLCTLFPDSLL 72
            A  SNSTP R  A + T F DS L
Sbjct: 1315 AAPSNSTPSRSVARIVTSFTDSPL 1338


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 166 EHLNTIGPDDAPLLSLIYTGDGSIGHWAADDSP 264
           +H+NT   +D+P  + I T   S G++    +P
Sbjct: 524 QHMNTSSMNDSPSPTTILTSVNSSGNYMCRSNP 556


>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 166 RHGDKRRDNSNSRRELRGVLS*SLESVLRD 77
           R G  +R +     E RGVL   LE+V+RD
Sbjct: 40  RRGGVKRISGLIYEERRGVLKVFLENVIRD 69


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 633 SRCSHHRVAFRMERPHETP 689
           SR  H  +AF +++P E P
Sbjct: 258 SRSDHELIAFEVKQPDENP 276


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,396
Number of Sequences: 2352
Number of extensions: 19645
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)