Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22a04
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        31   1.2  
U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.        31   1.2  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.      28   6.5  

>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 310 NSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPT 489
           N  A  A+ FR SHG  +P       +  +  AK +  N+K  T   IQ    T  +DPT
Sbjct: 203 NPLAQMAMGFRYSHGVGVPQNCETALSYYQKVAKTVVDNVKFTTGQTIQRLRLTDETDPT 262


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 310 NSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPT 489
           N  A  A+ FR SHG  +P       +  +  AK +  N+K  T   IQ    T  +DPT
Sbjct: 203 NPLAQMAMGFRYSHGVGVPQNCETALSYYQKVAKTVVDNVKFTTGQTIQRLRLTDETDPT 262


>U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 310 NSFASTAIRFRDSHGNLLPFRQVHEYTLCKPRAKNLASNMKNETDGVIQSTLRTASSDPT 489
           N  A  A+ FR SHG  +P       +  +  AK +  N+K  T   IQ    T  +DPT
Sbjct: 203 NPLAQMAMGFRYSHGVGVPQNCETALSYYQKVAKTVVDNVKFTTGQTIQRLRLTDETDPT 262


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 535 SVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELR 660
           S  ++ I+G  GCGKT  V Q +  +A +    V V  T+ R
Sbjct: 196 SCNVVIISGGTGCGKTTQVPQFILDEAHENNKHVRVMVTQPR 237


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 2   LKPQIL-PLSEYGLTFAPFSLIPFLMVP*NALKASAQNTSKLSPGV*IIASLIAMANIST 178
           L P IL P+    L  +PF+L PF+ +P NAL     +   LSP V  ++     A +  
Sbjct: 739 LSPFILSPVVMAPLVLSPFALSPFIGIP-NALTPLILSPFVLSPLV--LSPPFVSAFVLN 795

Query: 179 P*A--PMTHHCSALFTLVMDP 235
           P A  P      A+FT V+ P
Sbjct: 796 PYALSPAVLSNGAVFTAVLSP 816


>AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39D8B.3 protein.
          Length = 731

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +2

Query: 2   LKPQIL-PLSEYGLTFAPFSLIPFLMVP*NALKASAQNTSKLSPGV*IIASLIAMANIST 178
           L P IL P++   +  +PF+L PF+ VP N +     +   LSP   I++     A + T
Sbjct: 648 LTPFILSPVALTPIILSPFALSPFIGVP-NLMTPIILSPFVLSP--LILSPPFVSAFVLT 704

Query: 179 P*A--PMTHHCSALFTLVMDP 235
           P A  P      A+FT V+ P
Sbjct: 705 PYALSPTVLSSGAVFTAVLSP 725


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 541 QLIHITGFPGCGKTFPVTQLL-KTKAFKGQYRVAVPTTE 654
           +L+ I G PG GKTF +T LL +    K Q  V  PT E
Sbjct: 83  KLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTRE 121


>Z75956-6|CAB61026.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 311 IHLLQQL----FGLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYN-PPSERH 475
           IH+ QQ+    +  E   AIS  F K M T   S   K WP T  +RL E  N  P    
Sbjct: 272 IHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMT--IRLYEALNLSPPPLT 329

Query: 476 HQTPLFSIALIKEPTSPHKFP 538
              P F + +   P  P  FP
Sbjct: 330 LVEPQFELPM--PPFQPAVFP 348


>Z75954-8|CAB61020.2|  472|Caenorhabditis elegans Hypothetical
           protein R31.3 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 311 IHLLQQL----FGLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYN-PPSERH 475
           IH+ QQ+    +  E   AIS  F K M T   S   K WP T  +RL E  N  P    
Sbjct: 272 IHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMT--IRLYEALNLSPPPLT 329

Query: 476 HQTPLFSIALIKEPTSPHKFP 538
              P F + +   P  P  FP
Sbjct: 330 LVEPQFELPM--PPFQPAVFP 348


>Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC373.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 328 AIRFRDSHGNLLP-FRQVHEYTLCKPRAKNL 417
           A+RF+D +GN LP F    +YT C  ++ N+
Sbjct: 186 AVRFKDVNGNELPEFNDGFDYTHCTHKSINV 216


>AJ000259-1|CAA03975.1|  472|Caenorhabditis elegans osm-6 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +2

Query: 311 IHLLQQL----FGLETLTAISYHFDKFMSTRSVSLEQKIWPQT*KMRLMELYN-PPSERH 475
           IH+ QQ+    +  E   AIS  F K M T   S   K WP T  +RL E  N  P    
Sbjct: 272 IHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMT--IRLYEALNLSPPPLT 329

Query: 476 HQTPLFSIALIKEPTSPHKFP 538
              P F + +   P  P  FP
Sbjct: 330 LVEPQFELPM--PPFQPAVFP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,152
Number of Sequences: 27780
Number of extensions: 424898
Number of successful extensions: 1113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)