Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21p24
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   1.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   1.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   1.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   2.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   3.2  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   4.2  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    24   5.5  
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   5.5  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 298 VRNRIPTSSSSSWALEPNVGQVPYVFPDSSIHG-FLLP 188
           + + +P  +SSS A  P     P VFP S IHG  LLP
Sbjct: 15  INSSVPLINSSSPATPPESFD-PQVFPSSLIHGDNLLP 51


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -1

Query: 286 IPTSSSSSWALEPN-----VGQVPYVFPDSSIHGFLLPL 185
           +P+SS+SSWA EP+        +   F +S +    LPL
Sbjct: 204 LPSSSTSSWADEPSPSSTETSSIKRAFQESWLSALSLPL 242


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 274 SSSSWALEPNVGQVPYVFPDSS 209
           S  SW +  ++GQ+ Y+F D +
Sbjct: 581 SPKSWNISDDLGQIEYIFSDKT 602


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 216 TPLFMAFSFPFSTTIPLDPALCT 148
           TP+   +SFP    I + P LCT
Sbjct: 164 TPISPDYSFPLRVPINIPPPLCT 186


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 265 SWALEPNVGQVPYVFPDSS 209
           SW +  ++GQV Y+F D +
Sbjct: 553 SWNISDDLGQVEYIFSDKT 571


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 289 RIPTSSSSSWALEPNVGQVPYVFPDSSIHG 200
           RIP+     +AL+P+ G++ Y+   +S  G
Sbjct: 235 RIPSCFQGLYALKPSTGRISYLNVTNSYSG 264


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 289 RIPTSSSSSWALEPNVGQVPYVFPDSSIHGFLLPLFNDNP 170
           RI   S+S+++ E N+G +   F    I  FL  L  +NP
Sbjct: 250 RIRQLSTSTYSSEHNIGNISDPFLQVKILQFLSILGQNNP 289


>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 237 KSRMSFQTPLFMAFSFPFSTTIPLDPALCTLTYLTRVLVCHDFC 106
           +SRMS   P   A    F +T P++      T L   L  +DFC
Sbjct: 161 QSRMSQNDPAEQAAVSKFRSTFPVNRTCFKETALWMKLYGNDFC 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,818
Number of Sequences: 5004
Number of extensions: 22214
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)