Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21p24
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 1.2
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 28 2.1
08_02_0977 + 23227081-23228004,23228244-23228315,23229788-232298... 26 6.6
07_03_1265 + 25304408-25304545,25304895-25305032,25305746-253058... 26 6.6
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950 26 6.6
01_01_1001 - 7925858-7926559 26 6.6
11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965 26 8.7
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 26 8.7
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 26 8.7
03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788... 26 8.7
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 288 AYLHHHHRPGP*SPM*AKSRMSFQTPLFMAFSFPFSTT 175
A HHHH P P P S PL AFS +TT
Sbjct: 232 ALRHHHHHPPPPPPELQLLPASTTAPLAAAFSSNSTTT 269
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +3
Query: 243 TLGSKAQDDDDDVG----MRLRTNIKINK*IY 326
T+G DDDDD+G RL TN+ NK Y
Sbjct: 672 TIGPIPVDDDDDIGKEVVTRLTTNMATNKIFY 703
>08_02_0977 +
23227081-23228004,23228244-23228315,23229788-23229841,
23231763-23231840,23233080-23233173,23233352-23233423,
23233537-23233584,23233608-23233777,23234016-23234088,
23234850-23235199
Length = 644
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 18 GHVRGR-AGHLVKMGVTRMPKQVLCSKPDGSRSRGRLKLWSNRLECTEQ 161
G +RGR +G V+ V R ++++ ++ +RSR R + ++ LE Q
Sbjct: 271 GVIRGRRSGGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQ 319
>07_03_1265 +
25304408-25304545,25304895-25305032,25305746-25305807,
25306321-25306423,25306560-25306636,25306915-25306971,
25307202-25307323,25307551-25307667,25308188-25308273,
25308387-25308560,25308671-25308940
Length = 447
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 282 LHHHHRP--GP*SPM*AKSRM-SFQTPLFMAFSFPFSTTIPLDPALCTLTYLTRVLV 121
LHHHH P P S + + +TP F + + DP LC++ L ++++
Sbjct: 30 LHHHHHPLLAAAPPQQQGSAIWNSKTPFFFLLFGEYKSENLSDPNLCSVLILDQLIL 86
>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
Length = 369
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 223 FPDSSIHGFLLPLFNDNPLRSCSVHSN 143
F D+++ G LF ++ R+C++H+N
Sbjct: 284 FLDTAVFGGFCQLFRNDMARACTMHAN 310
>01_01_1001 - 7925858-7926559
Length = 233
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 280 TSSSSSWALEPNVGQVPYVFPDSSIHGFL 194
+SSSSSW E + G P+ FP +++ FL
Sbjct: 195 SSSSSSWEGEGHRGASPFAFP-ATVKEFL 222
>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
Length = 880
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 214 SSIHGFLLPLFNDNPLRSCSVHS 146
S++HGFL+P+F L CS HS
Sbjct: 826 SNMHGFLVPVFELGLL--CSAHS 846
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 271 SSSWALEPNVGQVPYVFPDSS 209
SSS +EP + QV +V PD+S
Sbjct: 9 SSSGGVEPKIRQVGFVTPDAS 29
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 279 HHHHRPGP*SPM*AKSRMSFQTPL 208
HHHH GP +P A S S Q L
Sbjct: 113 HHHHHGGPLTPPPATSSSSQQAGL 136
>03_02_0375 +
7880543-7880872,7881291-7881365,7881445-7881531,
7881619-7881723,7881806-7881876,7882552-7882840
Length = 318
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 207 IEESGKTYGTWPTLGSKAQDDDDDVGMRLRTNIKINK 317
+++SGKT S DDDDD + +T K+ K
Sbjct: 279 VKDSGKTTAQKKRRASSDTDDDDDDFIVSKTKTKMQK 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,162
Number of Sequences: 37544
Number of extensions: 162437
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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