Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21p24
(340 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory recep... 28 2.0
AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative chem... 28 2.0
Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 4.5
AF098997-1|AAC68718.1| 160|Caenorhabditis elegans Hypothetical ... 27 4.5
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical p... 26 7.9
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 26 7.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 26 7.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 26 7.9
AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical... 26 7.9
>U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory receptor
family protein 2 protein.
Length = 439
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 281 YIIIIVLGLRAQCRPSPVCLSRLLYSWL 198
Y ++++LGL RP+ L R +YSWL
Sbjct: 52 YYLLLILGLNQSIRPNNSLLFR-IYSWL 78
>AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative
chemoreceptor GUR-2 protein.
Length = 427
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 281 YIIIIVLGLRAQCRPSPVCLSRLLYSWL 198
Y ++++LGL RP+ L R +YSWL
Sbjct: 40 YYLLLILGLNQSIRPNNSLLFR-IYSWL 66
>Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical
protein K09B11.5b protein.
Length = 525
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 76 FGILVTPILTKCPARPL 26
FG+++T ILT+C A PL
Sbjct: 303 FGVVLTEILTRCAADPL 319
>Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical
protein K09B11.5a protein.
Length = 589
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 76 FGILVTPILTKCPARPL 26
FG+++T ILT+C A PL
Sbjct: 367 FGVVLTEILTRCAADPL 383
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
protein F54B3.1b protein.
Length = 3394
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 78 QVLCSKPDGSRSRGRLKLWSNRLECTEQD 164
Q+ KPDG ++RG + W LE + +
Sbjct: 556 QLCIVKPDGVKTRGFVNFWKKMLEVDDSN 584
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
protein F54B3.1a protein.
Length = 3396
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 78 QVLCSKPDGSRSRGRLKLWSNRLECTEQD 164
Q+ KPDG ++RG + W LE + +
Sbjct: 556 QLCIVKPDGVKTRGFVNFWKKMLEVDDSN 584
>AF098997-1|AAC68718.1| 160|Caenorhabditis elegans Hypothetical
protein T10D4.7 protein.
Length = 160
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 289 RIPTSSSSSWALEPNVGQVPYVFPDSSIHGFLLPLFN 179
+ P S ++ ++ YV PDS+I G PLF+
Sbjct: 121 KYPNGYSYQVKVDETTNRIEYVAPDSTIDGKKSPLFH 157
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 176 VVEKGKEKAMNRGVWKD 226
VV KGK+ +RGVW D
Sbjct: 468 VVNKGKDFGFSRGVWTD 484
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 177 TIPLDPALCTLTYLTRVLV 121
T PLD LC+++YL R L+
Sbjct: 971 TCPLDEYLCSISYLQRALL 989
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 177 TIPLDPALCTLTYLTRVLV 121
T PLD LC+++YL R L+
Sbjct: 965 TCPLDEYLCSISYLQRALL 983
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 177 TIPLDPALCTLTYLTRVLV 121
T PLD LC+++YL R L+
Sbjct: 971 TCPLDEYLCSISYLQRALL 989
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 177 TIPLDPALCTLTYLTRVLV 121
T PLD LC+++YL R L+
Sbjct: 965 TCPLDEYLCSISYLQRALL 983
>Z82278-10|CAC15860.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 207 FMAFSFPFSTTIPLDPALCTLTYLT 133
F + P +TTIP+DP T T T
Sbjct: 30 FTTTAVPTTTTIPIDPVTTTTTTTT 54
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 286 IPTSSSSSWALEPNVGQVPYVFPDSSIHGFLLPLF--NDNPLRSCSVHSNLFD 134
+PT +S ++ L P+ G+V P + + P+ + PL + S S + D
Sbjct: 5447 LPTDASGNYILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTD 5499
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 286 IPTSSSSSWALEPNVGQVPYVFPDSSIHGFLLPLF--NDNPLRSCSVHSNLFD 134
+PT +S ++ L P+ G+V P + + P+ + PL + S S + D
Sbjct: 5492 LPTDASGNYILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTD 5544
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 286 IPTSSSSSWALEPNVGQVPYVFPDSSIHGFLLPLF--NDNPLRSCSVHSNLFD 134
+PT +S ++ L P+ G+V P + + P+ + PL + S S + D
Sbjct: 5492 LPTDASGNYILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTD 5544
>AL132943-14|CAC14395.2| 390|Caenorhabditis elegans Hypothetical
protein Y116F11B.2 protein.
Length = 390
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 207 FMAFSFPFSTTIPLDPALCTLTYLT 133
F + P +TTIP+DP T T T
Sbjct: 30 FTTTAVPTTTTIPIDPVTTTTTTTT 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,250,663
Number of Sequences: 27780
Number of extensions: 133415
Number of successful extensions: 370
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -