Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21p09
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 69 7e-13
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 3.5
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 6.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.2
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 8.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 8.1
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 8.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 8.1
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 68.5 bits (160), Expect = 7e-13
Identities = 36/104 (34%), Positives = 64/104 (61%)
Frame = +1
Query: 220 LTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREEL 399
+ ++V GG +LLFNK K ++L L + +L + + + + +++L
Sbjct: 1 MAIKVELLGGLDLLFNKQKALSLSLSNL------GSTKLGSLIDYMAQIIEK--PSQKDL 52
Query: 400 FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 531
F+ + +VRPGI+VL+N++DWEL + Y L+E D+++F+STLHG
Sbjct: 53 FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 439 TPVYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNS 332
TP+ + +P TTL+ P+G P ST+ +N+
Sbjct: 710 TPIGSFRRPYPLDTTLIVKPSGQPYAPSTSRERNNN 745
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 385 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 519
EREE+FL+DD + L++ +D L + +EL + FIS
Sbjct: 7 EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 13 NDELKIFSNLINNSEQFLKIMRTGE--LILVNAIK 111
ND L SNL N SE F ++ TGE I +NA++
Sbjct: 525 NDVLYRGSNLRNTSELFALVIFTGEESKIRMNAVR 559
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 6.2
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -3
Query: 487 VHNLTVRGAPSLLH*STPVYQVGQNHPSR--TTLLFPPAGCPLTKSTALLTSNSDFENPV 314
+++ T + S+L+ STPV + S T+ + P+T STAL TS + V
Sbjct: 3342 LNSSTAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSV 3401
Query: 313 KMSSTAAVQFLSSLLY*RAIPLRPQTSL 230
SST SS + + P+ T+L
Sbjct: 3402 LNSST---PITSSTVVNSSTPITSSTAL 3426
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 340 SNSDF-ENPVKMSSTAAVQFLSSLLY*RAIPLRPQTS--LLQLEFLPFLSYGQFTNNNN 173
S S++ ++ K+ ++ Q SS+ A ++P S L + +P+LS G NN N
Sbjct: 328 SGSEYLQHASKLENSGIHQSKSSVFPQPASAMKPMASPMLPNVNSMPYLSNGDHNNNGN 386
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 190 TAHTIEMAETLTVEVMFGGGAELLFNKVKRKEIALPPLK 306
T +T+E E L E + G +LFN+ +E A+ ++
Sbjct: 210 TDYTVEQEEELNEEGVNESGVPVLFNEADEEEEAVEAME 248
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 271 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 450
VKR E+ L LK + + + W + L L D L + + +F + + E
Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282
Query: 451 EDW---ELHGQLNYELKENDKIM 510
++ +HG++ KE D IM
Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -3
Query: 457 SLLH*STPVYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKMSSTAAVQFLS 278
+++H TP Q HP+ + + PP +T+S A +++ + SST Q ++
Sbjct: 880 TVIHAPTPSTATFQGHPTISNVATPPLKQDVTESKASPVADA---SATHQSSTGLTQEIT 936
Query: 277 SL 272
L
Sbjct: 937 QL 938
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 433 VYQVGQNHPSRTTLLFPPAGCPLT 362
VYQ HP R LL P GC T
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKT 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,995
Number of Sequences: 5004
Number of extensions: 47020
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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