Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21p09
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0304 - 16469075-16469192,16469874-16469956,16470079-164701...   100   1e-21
09_02_0154 + 5055946-5058721,5058754-5058770                           31   0.51 
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257...    31   0.89 
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285...    28   6.3  
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    28   6.3  
12_01_0730 + 6505759-6508806                                           27   8.3  
06_02_0043 - 10906806-10907036,10907757-10907897                       27   8.3  
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    27   8.3  

>07_03_0304 -
           16469075-16469192,16469874-16469956,16470079-16470157,
           16470269-16470291
          Length = 100

 Score =  100 bits (239), Expect = 1e-21
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = +1

Query: 220 LTVEVMFGGGAELLFNK-VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREE 396
           LT+E  FGGG ELL  K  K  ++ L P      +  +    +K LL W+K NL+ ER E
Sbjct: 3   LTLE--FGGGLELLLEKSTKVHKVDLQP------NDGDGKVVMKGLLAWVKSNLIKERPE 54

Query: 397 LFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 534
           +FLK DSVRPG+LVLIN+ DWEL G L+ EL+E D ++FISTLHGG
Sbjct: 55  MFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/29 (37%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +1

Query: 442 INEEDWEL-HGQLNYELKENDKIMFISTL 525
           I+E +W+L +GQLN++L +N K+ +++++
Sbjct: 393 IDEAEWKLFYGQLNWQLTKNQKLNYVTSI 421


>01_03_0223 +
           13924231-13924510,13924670-13924893,13925482-13925735,
           13926041-13926422,13926938-13927369
          Length = 523

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 433 LVLINEEDWELHGQLNYELKENDKIMFISTL 525
           L+L N EDWE H ++ +    +DK+ F+S +
Sbjct: 143 LILANGEDWERHRKVVHPAFNHDKLKFMSVV 173


>12_01_0371 -
           2851186-2851491,2851582-2851765,2851967-2852156,
           2853375-2853613,2853862-2853947,2854720-2854827,
           2854929-2855031,2855152-2855213
          Length = 425

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 412 DSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 531
           +++ P +L+L  E  W + G  + +  +  ++++ S+LHG
Sbjct: 213 ENISPDLLLLNKEYAWHIGGGFSQQEVQEWRLLYHSSLHG 252


>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 259 LFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLI 360
           +F ++K+ +++   +KT    S   NW+LKELL+
Sbjct: 623 VFERLKQLDVSGTCIKTLDLRSMRGNWSLKELLL 656


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 457 SLLH*STPVYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKMSSTA 296
           +++H   PV Q   N  +RT+   PP  C   +++ALL     F+  V   STA
Sbjct: 18  TVMHILLPV-QATTNLTARTSSSIPPVPCHPDQASALLRLKHSFDATVGDYSTA 70


>06_02_0043 - 10906806-10907036,10907757-10907897
          Length = 123

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 277 RKEIALPPLKTFLPDSQNQNWTLKELL 357
           R+E+  PPL   LP  Q Q+W +  L+
Sbjct: 31  RREVPPPPLDPILPYLQGQSWCMHLLM 57


>02_04_0067 -
           19425019-19425288,19425393-19425647,19425766-19425937,
           19426069-19426302,19426523-19426656,19427663-19427746,
           19428355-19428645,19428788-19429120,19429317-19429390,
           19429464-19429644,19429993-19430096,19430232-19430392,
           19430727-19431040,19431583-19431864,19432431-19432732,
           19433176-19433266,19433368-19433421,19438917-19438993,
           19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 475 TVRGAPSLLH*STPVYQ--VGQNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKMS 305
           T RG     H   P+     G   PSR TLL  P GC   K+T LL      +  +K++
Sbjct: 160 TARGLSRRPHARIPILNDVTGILKPSRLTLLLGPPGC--GKTTLLLALAGKLDKNLKVT 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,993
Number of Sequences: 37544
Number of extensions: 269702
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)