Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21p09
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 31 0.80
Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 3.2
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 28 5.6
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 28 5.6
AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical... 27 7.4
Z75553-5|CAA99950.2| 533|Caenorhabditis elegans Hypothetical pr... 27 9.8
U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fb... 27 9.8
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -3
Query: 418 QNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKMSSTAAVQFLSSLLY*RAIPLRPQ 239
Q P + PPAG P+ S+ +D+E+P +M+ + F + LL P +P
Sbjct: 10 QGPPPNRPMPRPPAGMPMMTSSHEHDYTNDYEDPEEMARSRGEGFSNHLLIKTTPPPQPH 69
Query: 238 TSLLQLE 218
+ E
Sbjct: 70 PNFNSYE 76
>Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical
protein H36L18.1 protein.
Length = 446
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 13 NDELKIFSNLINNSEQFLKIMRTGELILVNAIKLFS*SIVIK-SNKSLNYTQIFYYCYL* 189
ND +++N + NS+ FLK+ +L V A+ S+ +K S+ L+ FY Y
Sbjct: 86 NDSFFLYTNKVENSKMFLKVQEGVDLYAV-AVHEIGHSLGLKHSSNHLSIMAPFYKQYTG 144
Query: 190 TAHTIEMAETLTVEVMFGGGAEL 258
+ + V+ ++G ++
Sbjct: 145 AVMHLHQDDISAVKRLYGAPVKI 167
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 285 NCTAAVEDIFTGFSKSELDVKRAVDLVKGQP 377
N T A EDI F + LD++ + + KG+P
Sbjct: 2011 NLTNASEDILRNFHQKILDIRTSAETFKGKP 2041
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical protein
C06E1.10 protein.
Length = 1148
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 253 ELLFNKVKRKEIALPPLKTFLPDS--QNQNWTLKELLIWLKDNL 378
E+L NK+ KE+ ++ L + +N+NW L+E L W+ +++
Sbjct: 1082 EMLLNKLIEKEVTT---RSSLKEQWLKNENWLLEEYLEWVPESV 1122
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 271 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 450
VKR E+ L +K F + W + LI L D L + + LF + + E
Sbjct: 229 VKRDELTLEGIKQFFVAVDREEWKF-DTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKE 287
Query: 451 EDW---ELHGQLNYELKENDKIM 510
++ +HG + E K+ D++M
Sbjct: 288 ANFTVSSMHGDM--EQKDRDEVM 308
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 271 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 450
VKR E+ L +K F + W + LI L D L + + LF + + E
Sbjct: 229 VKRDELTLEGIKQFFVAVDREEWKF-DTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKE 287
Query: 451 EDW---ELHGQLNYELKENDKIM 510
++ +HG + E K+ D++M
Sbjct: 288 ANFTVSSMHGDM--EQKDRDEVM 308
>AL132877-10|CAB60850.1| 402|Caenorhabditis elegans Hypothetical
protein Y105E8B.4 protein.
Length = 402
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 294 AAVEDIFTGFSKSELDVKRAVDLVK 368
A VE I+ G KS++DV +AVD+++
Sbjct: 281 AMVEFIYAGVIKSDIDVYQAVDVMQ 305
>Z75553-5|CAA99950.2| 533|Caenorhabditis elegans Hypothetical
protein ZC443.5 protein.
Length = 533
Score = 27.1 bits (57), Expect = 9.8
Identities = 24/70 (34%), Positives = 31/70 (44%)
Frame = +1
Query: 271 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 450
+KR L KT L DS+ K +L K + +R L+D V P LVL +
Sbjct: 407 LKRHGGCLQYHKTMLGDSEQLLKAFKTVLTERKYSENAQRLARILRDQPVSPKDLVLKHC 466
Query: 451 EDWELHGQLN 480
E HG LN
Sbjct: 467 EFAVEHGALN 476
>U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 8 protein.
Length = 535
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 146 LFDFITIDQENNLIAFTRISSPVLIILRNCSELLIKLENIF 24
+FD +T +Q LI R PVL + +L KLE F
Sbjct: 478 MFDQVTSEQRRELILTVRPHIPVLRQFPHGKHILAKLEKYF 518
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,063
Number of Sequences: 27780
Number of extensions: 264702
Number of successful extensions: 669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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