Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21p08
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    30   0.61 
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    29   1.9  
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U42439-1|AAA83505.1|  130|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 190 LNFLLRSCVV-NKNLKMIWMKIVLQFSNSSKLKV-RINHKCNIFKHYY 53
           L+FL   CVV N + K +  K+    SN S  K  +   KC+  +H+Y
Sbjct: 519 LSFLEEECVVPNGSEKSLLEKLCSNLSNDSSFKKSKQTQKCSTIRHFY 566


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 193 ELNFLLRSCVVNKNLKMIWMKIVLQFSNSSKLK 95
           ELN    SC V+K++ + W  I   F ++ KLK
Sbjct: 126 ELNVFELSCSVSKDIDLTWKMIYKLFPSTGKLK 158


>AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical
           protein F22E5.7 protein.
          Length = 144

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 172 SCVVNKNLKMIWMKIVLQFSNSSKLKVRINHKCNIFKHYYS 50
           S + +K L ++ +  +L FSNS+K    +N +C     +YS
Sbjct: 3   SSISSKLLLLLLLTFLLTFSNSTKFTALVNLRCRSHAVWYS 43


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 281 SKVIRAFFTLQLRTNNYCSEKKKNS 207
           S ++R F  +  ++NN+CSE + NS
Sbjct: 665 SNILRTFTFINSKSNNFCSENRINS 689


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 281 SKVIRAFFTLQLRTNNYCSEKKKNS 207
           S ++R F  +  ++NN+CSE + NS
Sbjct: 665 SNILRTFTFINSKSNNFCSENRINS 689


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 281 SKVIRAFFTLQLRTNNYCSEKKKNS 207
           S ++R F  +  ++NN+CSE + NS
Sbjct: 711 SNILRTFTFINSKSNNFCSENRINS 735


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 129 IFIQIIFR-FLLTTQLLNR-KLSSVIQA*VFFLFGTVIVCS*L*CKKGTNNFGIGLLIKK 302
           ++I +IF+ F +    LN+ ++  ++QA V F+F        L C+    N     +IK+
Sbjct: 292 LYIAVIFKIFAMKKSTLNKNEIRVLVQAIVIFVFFQASSSVFLICQTIAFNTATAFVIKR 351

Query: 303 VLNCL 317
           ++N L
Sbjct: 352 IINTL 356


>U42439-1|AAA83505.1|  130|Caenorhabditis elegans Hypothetical
           protein F19C7.6 protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +3

Query: 129 IFIQIIFRFLLTTQLLNRKLSSVIQA*VFFLFGTVIVCS*L*CKKGTNNFGIGLLIKKVL 308
           I+IQII++FL+++ +     S+++Q  V  L  ++I  S L    G   + I +   K+L
Sbjct: 42  IWIQIIYKFLMSSAVFVGLFSTIVQLIVGIL--SIIKWSSLEINNGKRKYSIVVFRNKLL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,273,035
Number of Sequences: 27780
Number of extensions: 129994
Number of successful extensions: 276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)