Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21p05
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    66   4e-12
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    38   0.001
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    28   1.1  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   10.0 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   10.0 

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +2

Query: 179 SLATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEP 358
           S   NF+   G++L L    +ATA I++H+F+      +Y  Y +   C+  A K  D  
Sbjct: 45  SKGCNFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSV 104

Query: 359 VRLRDAVNVAHNSINRGAGPL--ELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRF 529
            +LRD V        + +  L  E   EYW WR  +   E ++L  L F+     P+ +
Sbjct: 105 RKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPY 163


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
 Frame = +2

Query: 179 SLATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEP 358
           +L + ++ E G+ L L    +    I + ++         D   I  AC+    K+ + P
Sbjct: 29  TLGSEWIQEAGVLLNLTQNCVIVCLILFRRYCTLYPPRVPDLDAIVMACVSIGSKTTETP 88

Query: 359 VRLRDAVNVA---------HNSINRGAGPLEL-GDEYWSWRSAVAQAELLVLRLLGFNLE 508
             ++D  NV           N   RG    +L  +E +S R+ ++  EL VLR L F+  
Sbjct: 89  ASVQDICNVVVYLKERFKDTNFEARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFDTH 148

Query: 509 APSPHRFS 532
              PH+ +
Sbjct: 149 IVIPHKLA 156


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 458 VAQAELLVLRLLGFNLEAPSPHRF 529
           + QAE  +LR+L FNL  P+P  F
Sbjct: 316 ILQAERYILRVLEFNLAYPNPMNF 339


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 634 IENVENVTKVPVHDHKL 584
           I NV NV   P+HDH++
Sbjct: 200 IHNVLNVVAPPIHDHEV 216


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 673 SCNFHHXYIKK-LDIENVENVTKVPVHDHKLALSSP 569
           +C  H   IKK L I+ +   +   +H HK+  SSP
Sbjct: 409 ACKSHFERIKKTLFIDGLSTFSDTLIHLHKMLNSSP 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,306
Number of Sequences: 5004
Number of extensions: 48564
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)