Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21p05
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 52 3e-07
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 50 2e-06
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 45 5e-05
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 42 3e-04
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 40 0.002
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741 33 0.16
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 31 0.84
12_02_0226 + 15887835-15891188 29 3.4
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 29 3.4
08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242 28 5.9
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Frame = +2
Query: 182 LATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPV 361
L +F+ + GI+L L TIATA +F H+F+ I T C+ A K D P
Sbjct: 73 LYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPC 132
Query: 362 RLRDAVNVAHNSINR----GAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHR 526
L + VA+ ++ R A + D + ++ + E LVL + F+ P+R
Sbjct: 133 PLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKALILTGERLVLTTVRFDFNIQHPYR 191
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +2
Query: 194 FVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRD 373
F+ + G++L + TIATA +F H+FF D I T C+ AGK + P L+D
Sbjct: 70 FLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKD 129
Query: 374 AVNVAHNSINR 406
+ +++ I++
Sbjct: 130 VILISYEIIHK 140
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 191 NFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLR 370
+F+ + G++L L TIATA + H+F+ + + T C+ A K D P L+
Sbjct: 41 SFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQ 100
Query: 371 DAVNVAHNSINR 406
+ VA+ ++ R
Sbjct: 101 RVIIVAYETMYR 112
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +2
Query: 263 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR---GAGP-LELG 430
+KF +++ + I T C+ AGK + P L+D + V++ I++ AG ++
Sbjct: 120 YKFLLPMERDSIVVHTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQK 179
Query: 431 DEYWSWRSAVAQAELLVLRLLGFNLEAPSPHR 526
+ Y + + AE +VL LGF+L P++
Sbjct: 180 EVYDQQKELILLAERVVLATLGFDLNVHHPYK 211
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Frame = +2
Query: 239 IATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN-SINRGAG 415
+ATA + +H+F+ + + + +C+ AGK + P R + + V H R
Sbjct: 1 MATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENV 60
Query: 416 PLE----LGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRF 529
P+E +Y + + + E +L+ +GF PH+F
Sbjct: 61 PIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKF 102
>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
Length = 530
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 637 DIENVENVTKVPVHDHKLALSSPLFPNFFL-SADP 536
+IE+ E VT VP+H+ AL FPNF ADP
Sbjct: 410 EIESAEEVTAVPLHESPEALLEDEFPNFIKEEADP 444
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 640 LDIENVENVTKVPVHDHKLALSSPLFPNFFL-SADP 536
L+IE+ E VT VP H+ AL PNF ADP
Sbjct: 403 LEIESAEEVTAVPPHESPEALLEDEVPNFIKEEADP 438
>12_02_0226 + 15887835-15891188
Length = 1117
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 293 DYDCYVICTACLCAAGKSRDEPVRLRDAVN 382
D++ Y + +CLC AG+S D + D +N
Sbjct: 1036 DFETYSMFMSCLCKAGRSEDGLQLIHDMLN 1065
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 302 CYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPLELGDEYWSWRSAVAQAELLV 481
C++I A AG+S P+R R A S+ GA E+ DE + S+ A
Sbjct: 19 CFLIALAGAALAGRSSRSPLRRRPAALGCAASLAAGAAK-EIADEAGFFGSSGASLRDAA 77
Query: 482 LRLLGFNLEA 511
L+G L A
Sbjct: 78 ADLVGATLAA 87
>08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242
Length = 709
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 278 EADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGA 412
+ D+ D +V AC C+ GKS DE V + D H+ GA
Sbjct: 637 DGDEMQPDAWV--GACTCSDGKSSDEFVSIEDDQLAIHSENEAGA 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,512
Number of Sequences: 37544
Number of extensions: 306352
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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