Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21p05
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    38   0.005
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    38   0.005
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    33   0.14 
L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protei...    33   0.25 
L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protei...    33   0.25 
Z47812-6|CAC70105.1|  984|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical
           protein F43D2.1 protein.
          Length = 252

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
 Frame = +2

Query: 203 ECGIKLGLQPA-TIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAV 379
           E G  L  +P  TI  AA+++H+F+       +   V   +CL  AGK  D P + +D  
Sbjct: 39  EVGNALNCKPRPTIGVAAVYFHRFYMIHSFQSFSREVTALSCLFLAGKVEDFPKKCKDVC 98

Query: 380 NVAHNSINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPH 523
             A           E+  +Y +    V   E ++L  L F+L    P+
Sbjct: 99  QAAVTHYP------EIYSKYQNLVDDVMGLERVLLHSLKFDLHVALPY 140


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
 Frame = +2

Query: 182 LATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPV 361
           L    + +  I L L     AT  I + +++ +     Y       ACL  A K  +EP 
Sbjct: 108 LGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPR 167

Query: 362 RLRDAVNVAH------------NSIN----RGAGPLELGDEYWSWRSAVAQAELLVLRLL 493
           R R+  NV H            + IN    RG  P  +   Y + +  +  +E  +L  L
Sbjct: 168 RPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYINTKQHMINSERRILATL 227

Query: 494 GFNLEAPSPHR 526
           GF +    PHR
Sbjct: 228 GFVVHVKHPHR 238


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
 Frame = +2

Query: 182 LATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPV 361
           L    + +  I L L     AT  I + +++ +     Y       ACL  A K  +EP 
Sbjct: 108 LGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPR 167

Query: 362 RLRDAVNVAH------------NSIN----RGAGPLELGDEYWSWRSAVAQAELLVLRLL 493
           R R+  NV H            + IN    RG  P  +   Y + +  +  +E  +L  L
Sbjct: 168 RPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYINTKQHMINSERRILATL 227

Query: 494 GFNLEAPSPHR 526
           GF +    PHR
Sbjct: 228 GFVVHVKHPHR 238


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/94 (21%), Positives = 39/94 (41%)
 Frame = +2

Query: 248 AAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPLEL 427
           AA  +++FF        D   +  AC+  AGK+ D P +L+  V              + 
Sbjct: 77  AATLFNRFFNVHSLKRCDFRDVAAACVFLAGKNEDAPKKLKYVVTQLWQFKYPHNKQFQS 136

Query: 428 GDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRF 529
              +    + V   E ++L+ + F++    PH++
Sbjct: 137 EQHFLDQCNVVTLIEDVLLKTISFDINVDLPHQY 170


>L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protein
           1.1, isoform b protein.
          Length = 438

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 23/103 (22%), Positives = 42/103 (40%)
 Frame = +2

Query: 215 KLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN 394
           K+ +    +  A    H+F+       YD   +  AC+  AGKS++ P +L   ++V   
Sbjct: 67  KMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRE 126

Query: 395 SINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPH 523
             +R     E           +   E ++L+ + F+L    PH
Sbjct: 127 RKDRKQLTTETARN--EAAQIIVLLESMILQTIAFDLNVHLPH 167


>L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protein
           1.1, isoform a protein.
          Length = 468

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 23/103 (22%), Positives = 42/103 (40%)
 Frame = +2

Query: 215 KLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN 394
           K+ +    +  A    H+F+       YD   +  AC+  AGKS++ P +L   ++V   
Sbjct: 67  KMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRE 126

Query: 395 SINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPH 523
             +R     E           +   E ++L+ + F+L    PH
Sbjct: 127 RKDRKQLTTETARN--EAAQIIVLLESMILQTIAFDLNVHLPH 167


>Z47812-6|CAC70105.1|  984|Caenorhabditis elegans Hypothetical
           protein T05H10.5b protein.
          Length = 984

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 215 KLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAV 379
           K GLQP  I+ A++F+  F  + +  D+      T+     GKS D  +R  DA+
Sbjct: 6   KAGLQPMDISDASVFF--FQADVESKDF-----LTSLFDCEGKSDDRMLRYADAI 53


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
 Frame = +2

Query: 110  VDVMALQNRREKRVPDYRGAPNHSLATNFVFECGIKLGLQPATIATAAIFYHKFFKEADK 289
            V V+  QN R+K    Y   PNH  +  FV   G     +       +  + ++++    
Sbjct: 1082 VIVVWFQNARQKARKIYENQPNHESSDRFVRTPGSNFQCK-----RCSQVFQRYYELIQH 1136

Query: 290  NDYDCYVICTACLCAAGKSRDEPVRLRDAVN-VAHNSINRGAGPLELGDEYWSWRSAVAQ 466
                CY    A L +  KS +E +   +    +A   + + A  LEL             
Sbjct: 1137 QQKKCYKDDVAALASDNKSVEESLTEEEKSQLLAQQQVAQLASTLEL--------PKFQP 1188

Query: 467  AELLVLRLLGFNLEAPSPHRFSQ 535
            AEL  L+++G N   PS    SQ
Sbjct: 1189 AEL--LKMIGANSVTPSSSAASQ 1209


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 317 CRLRSSRNHSCRPL*RIC 264
           C   S+ NHSC+PL R+C
Sbjct: 170 CIKLSAANHSCKPLTRVC 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,624
Number of Sequences: 27780
Number of extensions: 275311
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)