Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o21
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   7.5  
01_05_0670 - 24159922-24160014,24160127-24160410,24160856-241609...    28   7.5  
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    27   9.9  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    27   9.9  

>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 499 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 609
           HE ++++ +P   G   EY   +A+  GG PI  I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250


>01_05_0670 -
           24159922-24160014,24160127-24160410,24160856-24160979,
           24161174-24161320,24161752-24161837,24162039-24162234
          Length = 309

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = -3

Query: 352 GSKFHAKTLCRSS*RLTSWYRVSHCEFL*KG*VFSFCPVLKRDLRQPCSCLEDPIASPLV 173
           G +  +  +C+ + +    Y + H   + +G  FS C   K        CLED +   ++
Sbjct: 66  GDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVECLEDNLCRKMM 125


>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 429 GFEVGDEVHVHHLLVVYN 376
           GF  GD + VHH+LV  N
Sbjct: 159 GFRTGDTIAVHHILVFLN 176


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 210  HGCRRSLFRTGQKLKTYPF*RNSQCETRYHEVNRQLERQR 329
            HGC   +  TGQ+  T P      C  R +EV R  E  R
Sbjct: 1064 HGCDEEMTETGQEFNTLP-----GCSFRKNEVRRSEELSR 1098


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,109,960
Number of Sequences: 37544
Number of extensions: 418606
Number of successful extensions: 1106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)