Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o13
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...   107   2e-24
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   3.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.1  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   8.9  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   8.9  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score =  107 bits (256), Expect = 2e-24
 Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = +2

Query: 245 VEKHLELEFDLGSLLASDTNDLDIKTLK-TNKDSYLLALTRDNAQLLLNKVWELPTERIE 421
           +E  + L+FDLG++ A D + LD   L  + K+S+L +L+RDN Q L+NK+  LP ER  
Sbjct: 5   IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTS 64

Query: 422 EAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFA-XXXXXXXXXXXXLQWDEQLQKWVPLY 598
           + ++++LP+  T LPRAKP+P PKP TKWQ FA             L +DE   +WVP +
Sbjct: 65  DGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKW 124

Query: 599 GFK 607
           G+K
Sbjct: 125 GYK 127


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 410 ERIEEAIVVRLPQPTTILPRAKPVPVPK 493
           ER++E IV+   +P   LP A P+P+ K
Sbjct: 72  ERLKEWIVLAKVRPEIPLPPAAPIPMKK 99


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 344 MNLCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHLQYPLLSEH 165
           +N CL    +CP R     + +L   LI + F P  V +   + +  L+     P+LS++
Sbjct: 456 LNRCLQLTDVCPPRASLETLCSLCVTLINDTFEP--VRMATTNVLATLVQIFSQPVLSKY 513

Query: 164 FL 159
            +
Sbjct: 514 IV 515


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 335 CLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLL 237
           CLS+ +LC   LCQ+      R L P +   LL
Sbjct: 469 CLSAFYLCMPSLCQKSYGTERRYLCPPIVLYLL 501


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 456 VVGCGNRTTMASSILSVGSSHTLFSSS*ALSRVNASKYESL 334
           V+ CG +  +  S++S G+S T+F     +  V AS Y+ +
Sbjct: 228 VIDCGVKENILRSLVSRGASVTVFPFDYPIQNV-ASNYDGI 267


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 191 NEILEREQKKADKYKPITVEKH 256
           +E +++E+   D+Y P+T E+H
Sbjct: 214 DETVKKEENDKDQYPPMTKEQH 235


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 329 SSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 189
           SS++     L    I+    IL   +FR L  Y  LL+F PF++ ++
Sbjct: 396 SSSYSLDRMLVAISILGACSILSLILFRNLYNYKELLAFAPFVVQNI 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,430
Number of Sequences: 5004
Number of extensions: 51580
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)