Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21o13
(624 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D25218-1|BAA04948.1| 399|Homo sapiens KIAA0112 protein. 144 2e-34
BC013043-1|AAH13043.1| 365|Homo sapiens RRS1 ribosome biogenesi... 144 2e-34
BC001811-1|AAH01811.1| 365|Homo sapiens RRS1 ribosome biogenesi... 144 2e-34
BC113507-1|AAI13508.1| 1749|Homo sapiens ubiquitin protein ligas... 31 4.4
BC113505-1|AAI13506.1| 1749|Homo sapiens ubiquitin protein ligas... 31 4.4
AY061886-1|AAL32103.1| 1749|Homo sapiens ubiquitin ligase E3 alp... 31 4.4
AF525401-1|AAO14997.1| 1709|Homo sapiens UBR1 E3a ligase protein. 31 4.4
>D25218-1|BAA04948.1| 399|Homo sapiens KIAA0112 protein.
Length = 399
Score = 144 bits (350), Expect = 2e-34
Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Frame = +2
Query: 188 VNEILER-EQKKADKYKPITVEKHLELEFDLGSLLASDTND-LDIKTLKTNKDSYLLALT 361
V E+L + EQ +A+K + ITV K LEL+FDLG+LLASD N ++ ++ L AL
Sbjct: 40 VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALA 99
Query: 362 RDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXX 541
RDN QLL+N++W+LPTER+EEAIV RLP+PTT LPR KP+P P+PLT+WQ+FA
Sbjct: 100 RDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRP 159
Query: 542 XXXXXLQWDEQLQKWVPLYGFKK 610
L WDE +W +G+++
Sbjct: 160 KKKTNLVWDEVSGQWRRRWGYQR 182
>BC013043-1|AAH13043.1| 365|Homo sapiens RRS1 ribosome biogenesis
regulator homolog (S. cerevisiae) protein.
Length = 365
Score = 144 bits (350), Expect = 2e-34
Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Frame = +2
Query: 188 VNEILER-EQKKADKYKPITVEKHLELEFDLGSLLASDTND-LDIKTLKTNKDSYLLALT 361
V E+L + EQ +A+K + ITV K LEL+FDLG+LLASD N ++ ++ L AL
Sbjct: 6 VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALA 65
Query: 362 RDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXX 541
RDN QLL+N++W+LPTER+EEAIV RLP+PTT LPR KP+P P+PLT+WQ+FA
Sbjct: 66 RDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRP 125
Query: 542 XXXXXLQWDEQLQKWVPLYGFKK 610
L WDE +W +G+++
Sbjct: 126 KKKTNLVWDEVSGQWRRRWGYQR 148
>BC001811-1|AAH01811.1| 365|Homo sapiens RRS1 ribosome biogenesis
regulator homolog (S. cerevisiae) protein.
Length = 365
Score = 144 bits (350), Expect = 2e-34
Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Frame = +2
Query: 188 VNEILER-EQKKADKYKPITVEKHLELEFDLGSLLASDTND-LDIKTLKTNKDSYLLALT 361
V E+L + EQ +A+K + ITV K LEL+FDLG+LLASD N ++ ++ L AL
Sbjct: 6 VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALA 65
Query: 362 RDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXX 541
RDN QLL+N++W+LPTER+EEAIV RLP+PTT LPR KP+P P+PLT+WQ+FA
Sbjct: 66 RDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRP 125
Query: 542 XXXXXLQWDEQLQKWVPLYGFKK 610
L WDE +W +G+++
Sbjct: 126 KKKTNLVWDEVSGQWRRRWGYQR 148
>BC113507-1|AAI13508.1| 1749|Homo sapiens ubiquitin protein ligase E3
component n-recognin 1 protein.
Length = 1749
Score = 30.7 bits (66), Expect = 4.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 404 EAPILYSVVAEHCHGSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNV 252
E L+ + H ++ M ++ CP L Q+ +V L +++PN+
Sbjct: 1339 EGKPLFGALQNRQHNGLKALMQFAVAQRITCPQVLIQKHLVRLLSVVLPNI 1389
>BC113505-1|AAI13506.1| 1749|Homo sapiens ubiquitin protein ligase E3
component n-recognin 1 protein.
Length = 1749
Score = 30.7 bits (66), Expect = 4.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 404 EAPILYSVVAEHCHGSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNV 252
E L+ + H ++ M ++ CP L Q+ +V L +++PN+
Sbjct: 1339 EGKPLFGALQNRQHNGLKALMQFAVAQRITCPQVLIQKHLVRLLSVVLPNI 1389
>AY061886-1|AAL32103.1| 1749|Homo sapiens ubiquitin ligase E3 alpha-I
protein.
Length = 1749
Score = 30.7 bits (66), Expect = 4.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 404 EAPILYSVVAEHCHGSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNV 252
E L+ + H ++ M ++ CP L Q+ +V L +++PN+
Sbjct: 1339 EGKPLFGALQNRQHNGLKALMQFAVAQRITCPQVLIQKHLVRLLSVVLPNI 1389
>AF525401-1|AAO14997.1| 1709|Homo sapiens UBR1 E3a ligase protein.
Length = 1709
Score = 30.7 bits (66), Expect = 4.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 404 EAPILYSVVAEHCHGSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNV 252
E L+ + H ++ M ++ CP L Q+ +V L +++PN+
Sbjct: 1322 EGKPLFGALQNRQHNGLKALMQFAVAQRITCPQVLIQKHLVRLLSVVLPNI 1372
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,149,832
Number of Sequences: 237096
Number of extensions: 1839217
Number of successful extensions: 4270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4265
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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