Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o13
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-7|CAB02731.1|  333|Caenorhabditis elegans Hypothetical pr...    81   5e-16
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    30   1.2  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    30   1.2  
AC024766-1|AAF59490.2|  160|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81035-7|CAB02731.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.9 protein.
          Length = 333

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 44/126 (34%), Positives = 67/126 (53%)
 Frame = +2

Query: 233 KPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKVWELPTE 412
           K   VEK ++   DLG+LL      +D + ++ +    L    R N QLL N +W+L  +
Sbjct: 4   KSTEVEKAIDPIIDLGNLLF-----IDREPIQGDASEGLEERARKNTQLLFNNIWQLEQK 58

Query: 413 RIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXXXXXXLQWDEQLQKWVP 592
           R+EEAI+V LP  T  LPR K +P  K  TKW+++A              +DE  ++W P
Sbjct: 59  RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKP 118

Query: 593 LYGFKK 610
            YG+++
Sbjct: 119 TYGYRR 124


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = +2

Query: 308 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 469
           LD KT   L T +++   +      Q  +N V   PTE    A    +  LP P  I P 
Sbjct: 219 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 278

Query: 470 AKPVPVPKPLTKWQEFA 520
             P P P P    Q  A
Sbjct: 279 PPPPPAPAPAAPQQASA 295


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = +2

Query: 308 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 469
           LD KT   L T +++   +      Q  +N V   PTE    A    +  LP P  I P 
Sbjct: 579 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 638

Query: 470 AKPVPVPKPLTKWQEFA 520
             P P P P    Q  A
Sbjct: 639 PPPPPAPAPAAPQQASA 655


>AC024766-1|AAF59490.2|  160|Caenorhabditis elegans Hypothetical
           protein Y39G10AL.1 protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 179 MDIVNEILEREQKKADKYK 235
           MDIVN+++ REQKK  +Y+
Sbjct: 106 MDIVNDLMAREQKKRQEYQ 124


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = +2

Query: 215 KKADKYKPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKV 394
           KK+   KP+ V+K +E            TN   +   K      L +   D+    L   
Sbjct: 437 KKSVPPKPVEVKK-VETPKPSQPPQVKPTNHTAVPATKPVAKKSLFSSDSDSDDDFLKSF 495

Query: 395 WEL-PTERIEEAIVVRLPQPTTILPRAKPVPVPKP 496
            +  P  + E   VV+ P    ++P+A  +P PKP
Sbjct: 496 SKSKPVAKTESIPVVKKPIEPVVVPKAVDIPAPKP 530


>AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical
           protein Y57G7A.6 protein.
          Length = 883

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
 Frame = +2

Query: 209 EQKKADK-YKPITVEKHL-------ELEFDLGSLLASDTNDLDIKTLKT 331
           E KK D  +KP+T E H        EL+  LG+LL  +  +  + TLKT
Sbjct: 332 EMKKLDDLWKPVTTESHFYTMRQVTELQQHLGNLLPQNGIETSLTTLKT 380


>Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical
           protein F49C5.6 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 362 GSMQVNMNLCLSSAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 189
           G++  ++ + L+   LC  RL    +  +    + N+ R L   + + + VPFL+ H+
Sbjct: 201 GTIVSSIIIVLTFGILCYRRLNAIVVTTMNSANLKNLQRQLFYALVIQTLVPFLLMHI 258


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 438  RTTMASSILSVGSSHTLFSSS*ALSRVNASKYESL 334
            RT  +S+ LS GSS    SSS A  +V++SK ES+
Sbjct: 1065 RTHQSSNSLSTGSSLPTSSSSSAPVKVSSSKIESM 1099


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
 Frame = +2

Query: 209 EQKKA-DKYKPITVEKH-------LELEFDLGSLLASDTNDLDIKTLKT 331
           E KK  D +KP+T+E H       +EL+  LG+L++S      +  LKT
Sbjct: 366 EMKKLNDLWKPVTIENHYHVMRQVIELQQHLGNLMSSTIIGQTLSILKT 414


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 267 SNSKCFSTVIGLYLSAFFCSLSNISF 190
           + S   ST+ GLYL AFFC  + + F
Sbjct: 93  TTSLIHSTISGLYLFAFFCYNTKLMF 118


>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 243 VIGLYLSAFFCSLSNISFTISIVIRTL 163
           VI  +    FC+LS I +TI  V RT+
Sbjct: 486 VIAFFFFVIFCTLSIIYYTIRTVFRTI 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,116
Number of Sequences: 27780
Number of extensions: 284724
Number of successful extensions: 1025
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)