Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o09
         (172 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   4.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    18   9.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    18   9.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    18   9.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 168 FFNNEIFIRLYYN 130
           ++NN  + +LYYN
Sbjct: 317 YYNNNNYKKLYYN 329


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 5   HCMRLSFYDAVRGRPV 52
           H MR  FY +  G P+
Sbjct: 451 HMMREEFYQSQYGDPI 466


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 165 FNNEIFIRLYYNN 127
           +NN  + +LY NN
Sbjct: 91  YNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 165 FNNEIFIRLYYNN 127
           +NN  + +LY NN
Sbjct: 91  YNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 165 FNNEIFIRLYYNN 127
           +NN  + +LY NN
Sbjct: 91  YNNNNYKKLYCNN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,702
Number of Sequences: 438
Number of extensions: 341
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)