Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o08
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    32   0.086
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.80 
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   4.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   5.6  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +3

Query: 333 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYA 476
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C +A
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWA 98



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 336 LIVNGFKYN---QVDDHVVCEYCEAEIKNWSEDE 428
           +  +GF YN      D   C YC+  + +W  D+
Sbjct: 144 MAASGFVYNPTADAKDAAHCLYCDINLHDWEPDD 177


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 541 SFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQY 389
           SF S  ++V+ S  +  + ++    Q    + C Y +H+SS  + I  + Y
Sbjct: 711 SFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 550 GLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAY 437
           G PSF   AL  ++ P DS S I     Q   + T  Y
Sbjct: 542 GNPSFVEQALQDLVQPTDSASQIFPLNPQSPSQFTIKY 579


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +3

Query: 357 YNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLV 536
           ++ + D +  E  E  ++ + E E I+Y     S + AY N I+      + + I+ +  
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN-ISNAMKAVNGLPIHPLFK 562

Query: 537 KEGRPKCVYRCMSNLQ 584
           K        RC   LQ
Sbjct: 563 KSKIRYAPDRCEQELQ 578


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 619 AGQKLTNVSIRDCKLDMHLYTHLGLP 542
           AG+  T+VS  +C++D H+    G+P
Sbjct: 10  AGKSDTSVSSLECEIDYHIEGSDGIP 35


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 375 HVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHE 497
           H +C  C   +   SED   + ++  +SP C+   +  + E
Sbjct: 764 HFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTE 804


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 324 FINSLIVNGFKYNQVDDHVVCEYCEAEI 407
           FIN++   G    ++  HVV + CE E+
Sbjct: 901 FINNIHYEGENTKKISVHVVSQRCEDEV 928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,732
Number of Sequences: 5004
Number of extensions: 54194
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)