Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21o08
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical p... 28 6.9
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 27 9.1
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 27 9.1
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 27 9.1
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 27 9.1
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 27 9.1
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 27 9.1
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 27 9.1
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
protein F46H5.4 protein.
Length = 2018
Score = 30.7 bits (66), Expect = 0.98
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +3
Query: 291 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCA 470
+ EN P N F + + G K + D + +C +E++ + + + L A
Sbjct: 494 NIENMPSCNLKFSSFIRQEGDKTSDEDIYRIC----SEMRRTNGKVHKKMFNFELELTLA 549
Query: 471 YANKIAEHESFGDNITINAV-LVKEGRPKCVYRCMSNLQSRMDTFV 605
+NK E++S G N+T+N+ ++ E +Y+ N + FV
Sbjct: 550 GSNKSKEYQSHGSNLTLNSERVIHEAMEIPIYQASLNKSYKNVIFV 595
>Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical
protein W04G3.4 protein.
Length = 588
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 26 ISNIFEYEFVVLEHNLSTVHVINAETKTKLGHINVSLNQNDPNV 157
+SNI Y V+ HN T+ +N KT ++ + L + N+
Sbjct: 484 VSNIHSYVLVIQNHNNFTIKDVNLSLKTNDKNVIIRLQDSVNNL 527
>Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical
protein C07A9.9 protein.
Length = 184
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 354 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 473
+Y VDD V C +C W D+C + H +L +C Y
Sbjct: 59 EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 428 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 458
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 432 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 462
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 427 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 457
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 334 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 364
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 385 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 415
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 467 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 497
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 625 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 533
N + N +++D KLD T+L LPSFT
Sbjct: 541 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,201
Number of Sequences: 27780
Number of extensions: 309903
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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