Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o04
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.67 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 215 IVRTPGGRLVYQYVKKPKKI 274
           + +  G RLVYQ+V  PK I
Sbjct: 527 LAKVDGQRLVYQFVDVPKDI 546


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 540 GFYLNLSPKIHFVAFFAD 487
           G Y  + P IHF   FAD
Sbjct: 452 GDYFFICPSIHFAQLFAD 469


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 540 GFYLNLSPKIHFVAFFAD 487
           G Y  + P IHF   FAD
Sbjct: 452 GDYFFICPSIHFAQLFAD 469


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 111 LHHSNHW*LL*FSKFLVRLH 52
           +HH+NH  +L  S FL   H
Sbjct: 281 VHHANHHAILGHSGFLCERH 300


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 262 LFDILINQAATRCPY 218
           LFD+  N++  +CPY
Sbjct: 550 LFDLDYNESEEQCPY 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,399
Number of Sequences: 438
Number of extensions: 2906
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)