Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21o01
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    40   2e-04
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    34   0.021
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   4.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   7.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.8  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.8  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 231 NEPCQVMVVVDGKNFLVCTLQKNKCIQVPLDLYFKTGDSIAFLTNGKCNVHLTG 392
           +E  Q ++    + F++CTL+     Q PL+L    GD + F  +G   +HL+G
Sbjct: 66  DEQMQELLEESQREFVLCTLKPGSLYQQPLNLTITPGDEVFFSASGDATIHLSG 119


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 267 KNFLVCTLQKNKCIQVPLDLYFKTGDSIAF-LTNGKCNVHLTG 392
           + F +CTL+K    Q P+D+ F  G+ + F    G   V+L+G
Sbjct: 77  EKFTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPVYLSG 119


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +3

Query: 156  NKRYTQVVEKPFHISQ-----AAMDTSTGDNEPCQVMV 254
            N+RY Q+VE  F   Q     A    S G N PC+ +V
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVV 1270


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 294 SGECTRESSFHQQQPSLDMAHYHQLMCP*QPVKCGTASPPL 172
           SG+ T+     Q    +    Y+Q   P QPV+ G  +PP+
Sbjct: 380 SGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPM 420


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 382 CTLHLPLVKKAIESPVLKYKSSGT*MHLFFWRVHTRKF 269
           CT+  PL  K I SP+ +  S+      +F+R    K+
Sbjct: 100 CTVETPLANKTIVSPLPESPSNDALTESYFFRQPASKY 137


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 17   MLSYLQEYKTKVVKIKITNQ 76
            +  Y+ +YKT++ ++++TNQ
Sbjct: 997  LTKYISDYKTEIQEMRLTNQ 1016


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 353 GNRVSCFEIQVKWNLNAF--VFLESAHEKVLSINNNHHLTWL 234
           G+ + CF   +  +      +F ES HEK +S   + +  W+
Sbjct: 720 GSELRCFHCSISCHSRCLKRLFAESEHEKTMSETVSENSKWM 761


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 293 LESAHEKVLSINNNHHLTW 237
           ++SAH  + S+N+N+  TW
Sbjct: 165 IQSAHPYISSLNSNYPTTW 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,746
Number of Sequences: 5004
Number of extensions: 41200
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)