Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n24
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    97   2e-21
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   2.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.3  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 43/79 (54%), Positives = 56/79 (70%)
 Frame = +3

Query: 312 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPQXKDIANL 491
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+VE++     KD   L
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGAL 136

Query: 492 QKAADFVXAFIYGFEVDDA 548
           QK  DFV AF  GF++DDA
Sbjct: 137 QKGMDFVQAFALGFDIDDA 155


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 442 LVFVLNLTCSNKCSTIGVNIFSQLSLSGVYL 350
           L F L  TC  +  ++ +N F     SG+YL
Sbjct: 25  LTFFLLTTCQLRILSLSINAFCVFGASGIYL 55


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 144  DFLPAKKTMKLKNIKRXATDDXGDGMEVEEPTIGES 251
            +F  +K+  K  +I    T+D   G+ VEE  I +S
Sbjct: 1275 EFAASKEPEKSSDINIVKTEDNSHGLSVEENRISKS 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,037
Number of Sequences: 5004
Number of extensions: 37366
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)