Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n24
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0105 - 836347-836769,837740-837937                               95   4e-20
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...    95   4e-20
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    29   2.4  

>03_01_0105 - 836347-836769,837740-837937
          Length = 206

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 39/84 (46%), Positives = 57/84 (67%)
 Frame = +3

Query: 297 SDPNESKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPQXK 476
           S+ +  +   RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K      
Sbjct: 20  SEMSGGRPQFRKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTP 79

Query: 477 DIANLQKAADFVXAFIYGFEVDDA 548
           D++NLQK ADFV AF+ GF++ DA
Sbjct: 80  DVSNLQKCADFVHAFMLGFDIADA 103


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 39/84 (46%), Positives = 57/84 (67%)
 Frame = +3

Query: 297 SDPNESKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPQXK 476
           S+ +  +   RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K      
Sbjct: 34  SEMSGGRPQFRKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTP 93

Query: 477 DIANLQKAADFVXAFIYGFEVDDA 548
           D++NLQK ADFV AF+ GF++ DA
Sbjct: 94  DVSNLQKCADFVHAFMLGFDIADA 117


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 PAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRN 446
           P  R+TP++ESW  I+     H  LQ  F+ + RN
Sbjct: 224 PTGRWTPMRESWGSIWRLDTNH-RLQAPFSIRIRN 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,208,338
Number of Sequences: 37544
Number of extensions: 213159
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)