Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n24
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061304-1|AAL28852.1|  240|Drosophila melanogaster LD21667p pro...   127   1e-29
AF188892-1|AAG17061.1|  240|Drosophila melanogaster potential RN...   127   1e-29
AE014298-3008|AAF50915.1|  240|Drosophila melanogaster CG11738-P...   127   1e-29
AY128479-1|AAM75072.1| 1058|Drosophila melanogaster RE53774p pro...    28   7.2  
AE014296-225|AAF47475.2| 1058|Drosophila melanogaster CG9153-PB,...    28   7.2  
AE014296-224|AAF47474.2| 1058|Drosophila melanogaster CG9153-PA,...    28   7.2  

>AY061304-1|AAL28852.1|  240|Drosophila melanogaster LD21667p
           protein.
          Length = 240

 Score =  127 bits (306), Expect = 1e-29
 Identities = 72/147 (48%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
 Frame = +3

Query: 117 METENIXVDDFLPAKKTMKLKNIKRXATDDXGDGMEVEEPTIGESXXXXXXXXXXXXXXG 296
           ME ENI  D F PAK+  K     R A+   G G +  E  + E+               
Sbjct: 1   MEAENIRADAFEPAKRATK-----RGAS---GGGQQDVEMQVDEATGIEGQVLGSSR--A 50

Query: 297 SDPNESKVA---MRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGP 467
           S P ++K A   +RKV+VP HRY+ LKE W+KIFTP+VEH+ LQ+RFN K R VE++VGP
Sbjct: 51  SAPPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGP 110

Query: 468 QXKDIANLQKAADFVXAFIYGFEVDDA 548
           +  DIANLQ+ ADFV AF+ GFEVDDA
Sbjct: 111 ETPDIANLQRGADFVRAFLCGFEVDDA 137


>AF188892-1|AAG17061.1|  240|Drosophila melanogaster potential
           RNA-binding protein protein.
          Length = 240

 Score =  127 bits (306), Expect = 1e-29
 Identities = 72/147 (48%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
 Frame = +3

Query: 117 METENIXVDDFLPAKKTMKLKNIKRXATDDXGDGMEVEEPTIGESXXXXXXXXXXXXXXG 296
           ME ENI  D F PAK+  K     R A+   G G +  E  + E+               
Sbjct: 1   MEAENIRADAFEPAKRATK-----RGAS---GGGQQDVEMQVDEATGIEGQVLGSSR--A 50

Query: 297 SDPNESKVA---MRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGP 467
           S P ++K A   +RKV+VP HRY+ LKE W+KIFTP+VEH+ LQ+RFN K R VE++VGP
Sbjct: 51  SAPPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGP 110

Query: 468 QXKDIANLQKAADFVXAFIYGFEVDDA 548
           +  DIANLQ+ ADFV AF+ GFEVDDA
Sbjct: 111 ETPDIANLQRGADFVRAFLCGFEVDDA 137


>AE014298-3008|AAF50915.1|  240|Drosophila melanogaster CG11738-PA
           protein.
          Length = 240

 Score =  127 bits (306), Expect = 1e-29
 Identities = 72/147 (48%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
 Frame = +3

Query: 117 METENIXVDDFLPAKKTMKLKNIKRXATDDXGDGMEVEEPTIGESXXXXXXXXXXXXXXG 296
           ME ENI  D F PAK+  K     R A+   G G +  E  + E+               
Sbjct: 1   MEAENIRADAFEPAKRATK-----RGAS---GGGQQDVEMQVDEATGIEGQVLGSSR--A 50

Query: 297 SDPNESKVA---MRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGP 467
           S P ++K A   +RKV+VP HRY+ LKE W+KIFTP+VEH+ LQ+RFN K R VE++VGP
Sbjct: 51  SAPPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGP 110

Query: 468 QXKDIANLQKAADFVXAFIYGFEVDDA 548
           +  DIANLQ+ ADFV AF+ GFEVDDA
Sbjct: 111 ETPDIANLQRGADFVRAFLCGFEVDDA 137


>AY128479-1|AAM75072.1| 1058|Drosophila melanogaster RE53774p
           protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 266 RLLWIAFPNCGLFNLHTISGVICSXALYIFKLHRL 162
           RLLW A       N++ + GV+C  A+Y F +  L
Sbjct: 782 RLLWFADLTFETENMYFLIGVLCGLAIYNFTIINL 816


>AE014296-225|AAF47475.2| 1058|Drosophila melanogaster CG9153-PB,
           isoform B protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 266 RLLWIAFPNCGLFNLHTISGVICSXALYIFKLHRL 162
           RLLW A       N++ + GV+C  A+Y F +  L
Sbjct: 782 RLLWFADLTFETENMYFLIGVLCGLAIYNFTIINL 816


>AE014296-224|AAF47474.2| 1058|Drosophila melanogaster CG9153-PA,
           isoform A protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 266 RLLWIAFPNCGLFNLHTISGVICSXALYIFKLHRL 162
           RLLW A       N++ + GV+C  A+Y F +  L
Sbjct: 782 RLLWFADLTFETENMYFLIGVLCGLAIYNFTIINL 816


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,104,629
Number of Sequences: 53049
Number of extensions: 386252
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)